PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004514828.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

Dof

Protein Properties

Length: 484aa MW: 53449.1 Da PI: 6.7891

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004514828.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.5	7.1e-39	132	192	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s +tkfCyynny+++qPryfCkaC+ryWt+GG++rnvPvG+grrknk++s XP_004514828.1 132 PDKILSCPRCNSIDTKFCYYNNYNVNQPRYFCKACQRYWTAGGTMRNVPVGAGRRKNKNNS 192 7899******************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-29	120	189	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	7.1E-32	134	190	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.351	136	190	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	138	174	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 484 aa Download sequence Send to blast
MIESKDPAIK LFGQNIPFSG EAEALTITGN QTASPTIMDV EQEERDFDES TNEDEEKDKE 60 HEAEKDTEKK KETDPPPNNA ETKNNNSATT LAKDIHNTKR LSIDEETSIS ENDQTDAATT 120 NHNSQEKILK KPDKILSCPR CNSIDTKFCY YNNYNVNQPR YFCKACQRYW TAGGTMRNVP 180 VGAGRRKNKN NSSSHYRHIT ISEALQAARV VAPNGTHHLS NLKTNGRILS FGLDHPQICD 240 SLENVFNPAE KKGLNSTRNS EFHSIEGTKI PVSRSQNDGH NSSASSKTVA NSIEESGKTM 300 SQESLPQKNN GFIPQVPCIT SVPWPYPWSS TIPSPPALCP PGFPMSFYPA AFWNVPWFPS 360 HPSVTNPMSL NSSLNSPTLG KHLRNDDNDD NLAKQDHLQN EESPKQRNGS VLVPKTLRID 420 DPSEAAKSSI WATLGITNEC VSGGGMTKAF QSKKDGKKHV AETSPMLRAN PAALARSLNF 480 HESS

Sequence ? help Back to Top

Protein Sequence Length: 484 aa Download sequence Send to blast

MIESKDPAIK LFGQNIPFSG EAEALTITGN QTASPTIMDV EQEERDFDES TNEDEEKDKE  60
HEAEKDTEKK KETDPPPNNA ETKNNNSATT LAKDIHNTKR LSIDEETSIS ENDQTDAATT  120
NHNSQEKILK KPDKILSCPR CNSIDTKFCY YNNYNVNQPR YFCKACQRYW TAGGTMRNVP  180
VGAGRRKNKN NSSSHYRHIT ISEALQAARV VAPNGTHHLS NLKTNGRILS FGLDHPQICD  240
SLENVFNPAE KKGLNSTRNS EFHSIEGTKI PVSRSQNDGH NSSASSKTVA NSIEESGKTM  300
SQESLPQKNN GFIPQVPCIT SVPWPYPWSS TIPSPPALCP PGFPMSFYPA AFWNVPWFPS  360
HPSVTNPMSL NSSLNSPTLG KHLRNDDNDD NLAKQDHLQN EESPKQRNGS VLVPKTLRID  420
DPSEAAKSSI WATLGITNEC VSGGGMTKAF QSKKDGKKHV AETSPMLRAN PAALARSLNF  480
HESS

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00394	DAP	Transfer from AT3G47500	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004514828.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004514828.1	0.0	cyclic dof factor 3-like
TrEMBL	A0A1S2Z4A4	0.0	A0A1S2Z4A4_CICAR; cyclic dof factor 3-like
STRING	XP_004514828.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF625	34	147

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47500.1	1e-106	cycling DOF factor 3