PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004514737.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family B3
Protein Properties Length: 903aa    MW: 99856.5 Da    PI: 6.7356
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004514737.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.45.5e-18317416198
                     EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                     f+k l+ sd+++ grlvlpk +ae++   ++++e+  l+++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++  e++
  XP_004514737.1 317 FEKMLSASDAGRIGRLVLPKACAEAYfpPISQPEGLPLRIQDVKGKEWMFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRMD-PEGK 409
                     89**************************555567778***************9989999999***9.********************876.7777 PP

                     .EEEEE- CS
              B3  92 lvvkvfr 98 
                     l +++++
  XP_004514737.1 410 LIMGFRK 416
                     7777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.8E-29309423IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.57E-18314416IPR015300DNA-binding pseudobarrel domain
CDDcd100171.05E-21315416No hitNo description
PROSITE profilePS5086311.166317418IPR003340B3 DNA binding domain
SMARTSM010191.2E-19317417IPR003340B3 DNA binding domain
PfamPF023621.6E-15317416IPR003340B3 DNA binding domain
PROSITE profilePS5105013.224582632IPR011124Zinc finger, CW-type
PfamPF074961.4E-9587629IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010030Biological Processpositive regulation of seed germination
GO:2000034Biological Processregulation of seed maturation
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 903 aa     Download sequence    Send to blast
MESKCCMNMT CATSTSIRWR KGWLLRSGEF ADLCDKCGAA YEQSAFCDMF HANDSGWREC  60
TSCGKHLHCG CVASRSQLEI LDTGGVSCIT CASNSGLHPI ASTEKVNESG TSKIINVSAQ  120
QSISLANQLN VRDMQVGNYG ENDGLRCWLK PHKVDTDGPS TVIKPEVLPS VGEFGSTLIS  180
QFHRESNGSS RTANAENCKA DDVQDIYESL APTNLSMTVA APLVNLNPFH NVLVDEREQS  240
KASPSLLLGS RSRHLLPKPP RPTLSSGLEA NAGTVSQIRI ARPPTEGRGS PRYWPRITDQ  300
ELQQISGDSN STIVPLFEKM LSASDAGRIG RLVLPKACAE AYFPPISQPE GLPLRIQDVK  360
GKEWMFQFRF WPNNNSRMYV LEGVTPCIQS MQLQAGDTVT FSRMDPEGKL IMGFRKATDS  420
ASVQETFPSK MHNGSHSSET SYSGVYVNVP ILSGYSGLLQ SQKGCSENHL NALSNRWNSA  480
GGDMDWHNVE MPQSRKRDGL CLPPILVPEK KKTRNIGSKS KRLLIDSQDA LELKLTWEEA  540
QDLLCPPLAV KPSVVMIEDH LFEEYEEPPV FGKKSIFVVR STGINEQWTQ CDSCLKWRKL  600
PVDVLIPPNW TCMENLWDQS RCSCAAPNEL NPRELDNLLR MNKEFKKQRL AAASQRSALE  660
RESSGLDALS NAAIVGDDAS DSGRTPVVTT TRHPRHRPGC SCIVCIQPPS GKGKHKPTCT  720
CNVCMTVKRR FKTLMMRKKK RQSEREAEIA QKNMLSWRTK DESEGDSTSR HLTPVGGSEN  780
QATVLNELDS RSQDHVSEAA KGQLDLNCQP DREVMQSGQN TLSMMTLLEE AILPLETYLK  840
QNGLSSLISE QQTNSDTNVQ AQTTNESEGR QNEDCHTASA VHEQEGSPKE NSGQERDQNN  900
SLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A5e-692954242131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1727738KRRFKTLMMRKK
2727740KRRFKTLMMRKKKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004514737.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1475370.0AC147537.39 Medicago truncatula clone mth2-133k2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004514737.10.0B3 domain-containing transcription repressor VAL2 isoform X2
TrEMBLA0A1S2Z4520.0A0A1S2Z452_CICAR; B3 domain-containing transcription repressor VAL2 isoform X2
STRINGXP_004514737.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.10.0HSI2-like 1