PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004514383.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family AP2
Protein Properties Length: 277aa    MW: 31412.6 Da    PI: 10.1384
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004514383.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2491.5e-1586135155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV+ ++++grW+++I+d      + k+++lg f+t   Aa+a+++a+ +++g
  XP_004514383.1  86 SQYRGVTLYRRTGRWESHIWD------CgKQVYLGGFDTSHAAARAYDRAAIRFRG 135
                     78*******************......55***********************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.6E-986135IPR001471AP2/ERF domain
SuperFamilySSF541714.71E-1586143IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.2E-1687142IPR001471AP2/ERF domain
PROSITE profilePS5103217.43887143IPR001471AP2/ERF domain
SMARTSM003801.1E-3087149IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MSMLDLNVDI IDETSDYSSN NSSPLICDLL KKEKDVSDII TRTLFPVSAD RGGRVSDSMT  60
QNGLKILQQK KPQVRKSRRG PRSRSSQYRG VTLYRRTGRW ESHIWDCGKQ VYLGGFDTSH  120
AAARAYDRAA IRFRGVDADI NFIFSDYEED LKQMKGLSKE EFVLRVRRQT NGISKRNSTF  180
RSALVLHKCD LRVRPFVGKT FCHKPPIKRD HEVETSCNPS TTYKGGINAN SNKTGNLHNL  240
DLSLGISPSS KQLINNDSGG WFPFGWTTCM IPNERIQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition (Probable). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004514383.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004514383.10.0ethylene-responsive transcription factor RAP2-7-like
SwissprotA0A0N7KMH03e-51AP24_ORYSJ; APETALA2-like protein 4
TrEMBLA0A1S2Z3G40.0A0A1S2Z3G4_CICAR; ethylene-responsive transcription factor RAP2-7-like
STRINGXP_004514383.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15652911
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.22e-42related to AP2.7
Publications ? help Back to Top
  1. Wang L, et al.
    Coordinated regulation of vegetative and reproductive branching in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
    [PMID:26631749]
  2. Dai Z,Wang J,Zhu M,Miao X,Shi Z
    OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
    Front Plant Sci, 2016. 7: p. 1891
    [PMID:28066457]