PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004514325.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family RAV
Protein Properties Length: 382aa    MW: 41763.2 Da    PI: 9.0662
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004514325.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP242.61.5e-1365113155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s+ykGV   + +grW A+I++      ++r++lg+f  ++eAaka++ a+++++g
  XP_004514325.1  65 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNQEDEAAKAYDVAAQRFRG 113
                     89****9888.8*********3.....5**********99************998 PP
2B398.54.1e-31198308199
                     EEEE-..-HHHHTT-EE--HHH.HTT............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                     f+k+ tpsdv+k++rlv+pk++ae+h            + +  +++ l +ed  g++W+++++y+++s++yvltkGW++Fvk+++Lk+gD+v F+
  XP_004514325.1 198 FEKAVTPSDVGKLNRLVIPKQHAEKHfplqksvdcgvgSASAGKGVLLNFEDVGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDTVCFH 292
                     89*************************999999988875556699************************************************** PP

                     E-SSSEE..EEEEE-S CS
              B3  84 ldgrsefelvvkvfrk 99 
                     ++   +++l++ + ++
  XP_004514325.1 293 RSTGPDKQLFIDWKDR 308
                     8877888888888765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.94E-2565120No hitNo description
SuperFamilySSF541714.97E-1765121IPR016177DNA-binding domain
PfamPF008476.5E-965113IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-2066121IPR001471AP2/ERF domain
SMARTSM003804.4E-2966127IPR001471AP2/ERF domain
PROSITE profilePS5103220.0266121IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.105.7E-40193309IPR015300DNA-binding pseudobarrel domain
CDDcd100172.88E-28197294No hitNo description
SuperFamilySSF1019366.54E-30197308IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.352198309IPR003340B3 DNA binding domain
PfamPF023622.1E-28198308IPR003340B3 DNA binding domain
SMARTSM010191.1E-24198309IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048573Biological Processphotoperiodism, flowering
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MDGGSCTVDE SSTTESLSIS IFPAKKPSTP PPPNSLCRVG SGASAVVDSD GGGVGEAESR  60
KLPSSKYKGV VPQPNGRWGA QIYEKHQRVW LGTFNQEDEA AKAYDVAAQR FRGKDAVTNF  120
KPLSGDDNND DDMEAEFLNS HSKSEIVDML RKHTYNDELE QSKHSRGFVA RRHGCAGGVT  180
FAGLATSACV KKAREALFEK AVTPSDVGKL NRLVIPKQHA EKHFPLQKSV DCGVGSASAG  240
KGVLLNFEDV GGKVWRFRYS YWNSSQSYVL TKGWSRFVKE KNLKAGDTVC FHRSTGPDKQ  300
LFIDWKDRKN VNEVGLFVPV GPVVEPIQMV RLFGVNILKL PGSDANNNNG NAIAAVFCNG  360
KRREMEMFNL DCCKKPKIIG AL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-5519530811117DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences. Functionally redundant with TEM2. {ECO:0000269|PubMed:18718758}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00024PBMTransfer from AT1G25560Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004514325.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expressed with a circadian rhythm showing a peak at dawn. {ECO:0000269|PubMed:18718758}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004514325.10.0AP2/ERF and B3 domain-containing transcription factor RAV1-like
SwissprotQ9C6M51e-140RAVL1_ARATH; AP2/ERF and B3 domain-containing transcription repressor TEM1
TrEMBLA0A1S2Z3E60.0A0A1S2Z3E6_CICAR; AP2/ERF and B3 domain-containing transcription factor RAV1-like
STRINGXP_004514325.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29203274
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25560.11e-128RAV family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Choi D, et al.
    iNID: an analytical framework for identifying network models for interplays among developmental signaling in Arabidopsis.
    Mol Plant, 2014. 7(5): p. 792-813
    [PMID:24380880]
  3. Sgamma T,Jackson A,Muleo R,Thomas B,Massiah A
    TEMPRANILLO is a regulator of juvenility in plants.
    Sci Rep, 2014. 4: p. 3704
    [PMID:24424565]
  4. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  5. Marín-González E, et al.
    SHORT VEGETATIVE PHASE Up-Regulates TEMPRANILLO2 Floral Repressor at Low Ambient Temperatures.
    Plant Physiol., 2015. 169(2): p. 1214-24
    [PMID:26243615]
  6. Matías-Hernández L, et al.
    TEMPRANILLO Reveals the Mesophyll as Crucial for Epidermal Trichome Formation.
    Plant Physiol., 2016. 170(3): p. 1624-39
    [PMID:26802039]