PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004514235.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | bHLH | ||||||||
Protein Properties | Length: 488aa MW: 52616.9 Da PI: 8.2148 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 46.5 | 6.7e-15 | 301 | 346 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn+ Er+RRd+iN+++ +L++l+P++ K +Ka++L +++eY+k+Lq XP_004514235.1 301 HNQSERKRRDKINQRMKTLQKLVPNS-----NKTDKASMLDEVIEYLKNLQ 346 9************************7.....5******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 3.53E-18 | 294 | 358 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.403 | 296 | 345 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.5E-12 | 301 | 346 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.0E-17 | 301 | 351 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.23E-17 | 301 | 350 | No hit | No description |
SMART | SM00353 | 1.0E-16 | 302 | 351 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009567 | Biological Process | double fertilization forming a zygote and endosperm | ||||
GO:0009506 | Cellular Component | plasmodesma | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 488 aa Download sequence Send to blast |
MSQCVPSWDV EENPEPPRVT LRSNSNSTNP DVPMLDYDVA ELTWENGQIS MHGLGLPRVP 60 VKHSTNAATT PNKDTWEKPR ASGTLESIVN QATTIPHRGK SPFFAGGGMY GNVLVPWLDP 120 QRAAAISATT NGMTMDALVP CSNPTKEQRI QTMDSISRVG IGTYMVGGPT PVGSCSAAPA 180 ATQEEGALVV AAAVKRGRVA HVVGSGRGQS VSGSGTFGRQ SEQVTLDTYE REFGMGGFTS 240 TSIASLDNTS SEKQCTKTTV DDHDSVCHSR PTMEDADVDA KKRENRKSSV STKRSRAAAI 300 HNQSERKRRD KINQRMKTLQ KLVPNSNKTD KASMLDEVIE YLKNLQAQVQ IVNRFNMSSM 360 MMPMNMQQQL QMSIMNQMGM GMGMGMTGMP MGIGMGMGMD MNTMNRANIP NIPGMPPVLH 420 PSAFMPMASW DVGGSCDRLQ GPPGATGMTD PLSTLLGCQS QPMSMDAYSR IAAMCQQMQQ 480 PQGPGPKS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 304 | 309 | ERKRRD |
2 | 305 | 310 | RKRRDK |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00034 | PBM | Transfer from AT4G00050 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004514235.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004514235.1 | 0.0 | transcription factor UNE10 | ||||
TrEMBL | A0A1S2Z393 | 0.0 | A0A1S2Z393_CICAR; transcription factor UNE10 | ||||
STRING | XP_004514235.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5676 | 33 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00050.1 | 5e-90 | bHLH family protein |