PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004513871.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | C2H2 | ||||||||
Protein Properties | Length: 167aa MW: 19407 Da PI: 9.9267 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.7 | 0.00019 | 28 | 50 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C+k+F++ +L H +H XP_004513871.1 28 HKCNLCDKTFNSEKTLDGHKTSH 50 79*****************9888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.41E-5 | 24 | 50 | No hit | No description |
SMART | SM00355 | 0.0082 | 28 | 50 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.785 | 28 | 55 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.3E-7 | 28 | 52 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 30 | 50 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 167 aa Download sequence Send to blast |
MRKKNPSPSS TYHSRVDNEK TNSSSMMHKC NLCDKTFNSE KTLDGHKTSH RSKLVQPPIK 60 KRWWNDTYDD QQILSAADLT KYSPPRSRET KKRCGKSIID YEAINVAQIL CEISRADHEI 120 LKLSTDIDNQ INNKLVTTVK DNNKSLVVRF KFPKDKKIFQ THHEDCN |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004513871.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004513871.1 | 1e-121 | uncharacterized protein LOC101489273 | ||||
TrEMBL | A0A1S2Z2J0 | 1e-120 | A0A1S2Z2J0_CICAR; uncharacterized protein LOC101489273 | ||||
STRING | XP_004513871.1 | 1e-121 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15177 | 3 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G27730.1 | 3e-06 | salt tolerance zinc finger |