PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004513686.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | C3H | ||||||||
Protein Properties | Length: 437aa MW: 47025.1 Da PI: 8.0123 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 28 | 3.8e-09 | 112 | 133 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 + C ++ + G C+yG+rCkF H+ XP_004513686.1 112 RVCTYWIQ-GNCSYGERCKFLHS 133 78******.*************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 9.244 | 22 | 48 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.065 | 23 | 47 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.042 | 109 | 135 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.3E-5 | 110 | 134 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.0E-6 | 112 | 133 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.9E-7 | 112 | 132 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.83E-6 | 112 | 133 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF50978 | 2.56E-50 | 132 | 187 | IPR017986 | WD40-repeat-containing domain |
Gene3D | G3DSA:2.130.10.10 | 3.1E-17 | 133 | 248 | IPR015943 | WD40/YVTN repeat-like-containing domain |
SMART | SM00320 | 2.7E-5 | 139 | 178 | IPR001680 | WD40 repeat |
Pfam | PF00400 | 5.7E-4 | 142 | 178 | IPR001680 | WD40 repeat |
PROSITE profile | PS50082 | 14.184 | 146 | 187 | IPR001680 | WD40 repeat |
PROSITE profile | PS50294 | 22.438 | 146 | 348 | IPR017986 | WD40-repeat-containing domain |
PROSITE pattern | PS00678 | 0 | 165 | 179 | IPR019775 | WD40 repeat, conserved site |
PRINTS | PR00320 | 9.6E-7 | 165 | 179 | IPR020472 | G-protein beta WD-40 repeat |
SMART | SM00320 | 1.1 | 218 | 255 | IPR001680 | WD40 repeat |
SuperFamily | SSF50978 | 2.56E-50 | 225 | 429 | IPR017986 | WD40-repeat-containing domain |
Gene3D | G3DSA:2.130.10.10 | 3.1E-34 | 249 | 427 | IPR015943 | WD40/YVTN repeat-like-containing domain |
SMART | SM00320 | 3.7E-4 | 262 | 299 | IPR001680 | WD40 repeat |
Pfam | PF00400 | 0.0012 | 266 | 299 | IPR001680 | WD40 repeat |
PROSITE profile | PS50082 | 13.282 | 269 | 308 | IPR001680 | WD40 repeat |
PROSITE pattern | PS00678 | 0 | 286 | 300 | IPR019775 | WD40 repeat, conserved site |
PRINTS | PR00320 | 9.6E-7 | 286 | 300 | IPR020472 | G-protein beta WD-40 repeat |
SMART | SM00320 | 4.5E-5 | 302 | 339 | IPR001680 | WD40 repeat |
Pfam | PF00400 | 1.9E-4 | 304 | 338 | IPR001680 | WD40 repeat |
PRINTS | PR00320 | 9.6E-7 | 326 | 340 | IPR020472 | G-protein beta WD-40 repeat |
SMART | SM00320 | 3 | 343 | 386 | IPR001680 | WD40 repeat |
SMART | SM00320 | 6 | 389 | 426 | IPR001680 | WD40 repeat |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 437 aa Download sequence Send to blast |
MDFDGGNKRV YNRLGGPTGG DSKNQKVCFQ WQAGKCSRYP CPFLHSELPS FNGNGAPSKR 60 PYGSGENSSF SGRRGGASFN TWGRGGGRGR GGGGRGGVGG GGGRGVVVSG DRVCTYWIQG 120 NCSYGERCKF LHSWSLGDGF SLLTQLEGHK KVVSGIAMPS GSDKLYTGST DETVRVWDCQ 180 SGQCIAVINL GGEVGCMISE GPWVFVGIPN FVKAWNTQNS MELSLNGPVG QVYALVVIND 240 MLFAGTQDGS ILVWKFNVVA NCFEPAASLK GHSRGVVSLV VGANRLYSGS MDNTIRVWNL 300 ETLQCIQTLT GHTSVVMSVL CWDQFLLSCS LDKTVKVWFA TEGGNLEVTY THTEEHGIVT 360 LCGMHDSQGK PILMCSCNDN TVRLYDLPSF AERGKIFNKQ EVRAIQAGPG SIFFTGDGTG 420 QVRVWNWIPE PANNSIQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6g6m_A | 2e-24 | 134 | 426 | 5 | 323 | Tako8 |
6g6n_A | 2e-24 | 134 | 426 | 5 | 323 | Tako8 |
6g6n_B | 2e-24 | 134 | 426 | 5 | 323 | Tako8 |
6g6n_C | 2e-24 | 134 | 426 | 5 | 323 | Tako8 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 92 | 100 | GGRGGVGGG |
2 | 94 | 103 | RGGVGGGGGR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004513686.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015044 | 7e-48 | AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004513686.1 | 0.0 | zinc finger CCCH domain-containing protein 48 | ||||
Swissprot | Q9FNZ2 | 0.0 | C3H48_ARATH; Zinc finger CCCH domain-containing protein 48 | ||||
TrEMBL | A0A1S2Z277 | 0.0 | A0A1S2Z277_CICAR; zinc finger CCCH domain-containing protein 48 | ||||
STRING | XP_004513686.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7446 | 33 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25440.1 | 0.0 | zinc finger WD40 repeat protein 1 |