PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004513647.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family C2H2
Protein Properties Length: 358aa    MW: 41082.8 Da    PI: 7.1305
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004513647.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.1e-05197216120
                     EEETTTTEEESSHHHHHHHH CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                     ++Cp C k+F+r  n++ H+
  XP_004513647.1 197 FSCPVCFKTFNRYNNMQMHM 216
                     89*****************9 PP

2zf-C2H214.30.00012281303123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     + C +Cgk F  + + ++H +++
  XP_004513647.1 281 FMCRKCGKAFAVRGDWRTHEKNC 303
                     89*****************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.88E-5173219No hitNo description
SMARTSM003550.38197219IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.64197224IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.1E-6197216IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280199219IPR007087Zinc finger, C2H2
SuperFamilySSF576671.63E-6263301No hitNo description
Gene3DG3DSA:3.30.160.609.2E-6268301IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035549281301IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.808281301IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009860Biological Processpollen tube growth
GO:0010500Biological Processtransmitting tissue development
GO:1990058Biological Processfruit replum development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MADPYSNFFS SNFFHQFNNN PSHHHHYPSS NPHHHPNYLH NFINHTTTFN TTNTFFHYHH  60
LQTTTPSYSS PPSPPLKEAL PLMSLIPTKQ QEYLDDESCS LMDVEDFSHK FEEIKDDEKS  120
DEGVTVALHI GLPSPSAAEM ATMMNMSSSS SEIMNEREDV ISEDSSNTNG FLSCNRLNKG  180
QYWIPTPSQI LIGPTQFSCP VCFKTFNRYN NMQMHMWGHG SQYRKGPESL RGTQPTGMLR  240
LPCYCCSPGC RNNIDHPRAK PLKDFRTLQT HYKRKHGIKP FMCRKCGKAF AVRGDWRTHE  300
KNCGKLWYCL CRSDFKHKRS LKDHIRAFGS GHAAYGVDGF EEDDEPASEV EQDNDSTQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004513647.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004513647.10.0zinc finger protein WIP2-like
SwissprotQ9SVY11e-147ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A1S2Z2490.0A0A1S2Z249_CICAR; zinc finger protein WIP2-like
STRINGXP_004513647.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-136C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]