PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_004513558.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 309aa MW: 35571.3 Da PI: 4.6333 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.8 | 1.6e-15 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd +l+ +v+++G +W+ ++ g+ R++k+c++rw +yl XP_004513558.1 14 KGTWTAEEDRKLIAYVTRYGCWNWRQLPKFAGLARCGKSCRLRWMNYL 61 799*****************99************************97 PP | |||||||
2 | Myb_DNA-binding | 60.1 | 4.9e-19 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++T++E+el+++ +k++G++ W+tIa++++ gRt++++k++w++ XP_004513558.1 67 RGNFTQDEEELIIKMHKKMGNK-WSTIAAELP-GRTDNEVKNHWHT 110 89********************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.443 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.57E-30 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.6E-9 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.4E-13 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-23 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.77E-9 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 27.753 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 1.1E-17 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.3E-16 | 67 | 110 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.0E-26 | 69 | 115 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.36E-12 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 309 aa Download sequence Send to blast |
MARTPSCDKS GMRKGTWTAE EDRKLIAYVT RYGCWNWRQL PKFAGLARCG KSCRLRWMNY 60 LRPNIKRGNF TQDEEELIIK MHKKMGNKWS TIAAELPGRT DNEVKNHWHT SLKKRAEDNT 120 KTNQETQTSK SKDINMESTQ EQDIVFFHVT PTSSQFSDTT SPLSPFSSSS EVSSIDQSNE 180 NLVLEDEFGF LENVDESFWK DPYLDNISNT QSGIVQGDTT NNCAYQNQDT MIHEDAFLVS 240 PNHSSNESLF MDNNDLFGSF LESYRESTVD SFWTHPFVAD MCHVPSELVT PLAMESDYFS 300 IVYDEDLWS |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-28 | 12 | 117 | 5 | 109 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor involved in cold-regulation of CBF genes and in the development of freezing tolerance. May be part of a complex network of transcription factors controlling the expression of CBF genes and other genes in response to cold stress. Binds to the MYB recognition sequences in the promoters of CBF1, CBF2 and CBF3 genes (PubMed:17015446). Involved in drought and salt tolerance. May enhance expression levels of genes involved in abscisic acid (ABA) biosynthesis and signaling, as well as those encoding stress-protective proteins (PubMed:19161942). {ECO:0000269|PubMed:17015446, ECO:0000269|PubMed:19161942}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_004513558.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA) and drought stress (PubMed:19161942). Induced by salt stress (PubMed:19161942). {ECO:0000269|PubMed:19161942}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT138850 | 1e-115 | BT138850.1 Medicago truncatula clone JCVI-FLMt-15C13 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004513558.1 | 0.0 | transcription factor MYB30-like | ||||
Swissprot | Q9LTC4 | 6e-59 | MYB15_ARATH; Transcription factor MYB15 | ||||
TrEMBL | A0A1S2Z206 | 0.0 | A0A1S2Z206_CICAR; transcription factor MYB30-like | ||||
STRING | XP_004513558.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF356 | 33 | 186 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G28110.1 | 2e-57 | myb domain protein 41 |