PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004513518.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family C2H2
Protein Properties Length: 298aa    MW: 33802.7 Da    PI: 7.1865
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004513518.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.74.4e-05114133120
                     EEETTTTEEESSHHHHHHHH CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                     ++C+ C+k+F+r  n++ H+
  XP_004513518.1 114 FSCTVCNKMFNRFNNMQMHM 133
                     89*****************9 PP
2zf-C2H213.90.00016199221123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     + C +Cgk+F  + + ++H +++
  XP_004513518.1 199 FGCRKCGKPFAVRGDWRTHEKNC 221
                     56*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.74E-5110135No hitNo description
Gene3DG3DSA:3.30.160.604.7E-5114133IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.889114141IPR007087Zinc finger, C2H2
PROSITE patternPS000280116136IPR007087Zinc finger, C2H2
SuperFamilySSF576671.31E-5182219No hitNo description
Gene3DG3DSA:3.30.160.607.0E-5185219IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010087Biological Processphloem or xylem histogenesis
GO:0010305Biological Processleaf vascular tissue pattern formation
GO:0010588Biological Processcotyledon vascular tissue pattern formation
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MQSHSLSYIS SYETVDESSI SLSLGPPGTH HKPKLSSSTS NHHSATTLHH HLHQHQKQNL  60
TIDDDQSGVT VALHIGLPTT NISQNNIPIN KPDPIQGQYW IPSPAQILIG PTQFSCTVCN  120
KMFNRFNNMQ MHMWGHGSQY RKGPESLRGV KPASSMLRLP CYCCAEGCKN NIEHPRSRPL  180
KDFRTLQTHY KRKHGAKPFG CRKCGKPFAV RGDWRTHEKN CGKLWFCICG SDFKHKRSLK  240
DHVRAFGDGH APHTVESCED QDVLLGDEYD EEFELDEDDE DYDDDNDNIN GMAFSFRS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004513518.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1481550.0AC148155.18 Medicago truncatula clone mth2-9p11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004513518.10.0zinc finger protein WIP6-like
SwissprotQ9FX681e-117ZWIP6_ARATH; Zinc finger protein WIP6
TrEMBLA0A1S2Z1X00.0A0A1S2Z1X0_CICAR; zinc finger protein WIP6-like
STRINGXP_004513518.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.11e-115C2H2-like zinc finger protein