PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004513329.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

C2H2

Protein Properties

Length: 476aa MW: 53242 Da PI: 9.4652

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004513329.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.5	5.6e-06	58	80	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F r nL+ H r+H XP_004513329.1 58 YVCEICNQGFQRDQNLQMHRRRH 80 9*********************9 PP
2	zf-C2H2	14.4	0.00011	135	157	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k + +s++k H++t+ XP_004513329.1 135 WVCERCSKGYAVQSDYKAHLKTC 157 58*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	5.23E-5	55	81	No hit	No description
Gene3D	G3DSA:3.30.160.60	2.0E-5	57	80	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.0052	58	80	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.97	58	80	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS01359	0	60	140	IPR019786	Zinc finger, PHD-type, conserved site
PROSITE pattern	PS00028	0	60	80	IPR007087	Zinc finger, C2H2
SMART	SM00355	190	99	129	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	7.0E-4	126	156	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	100	135	162	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	8.787	155	195	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 476 aa Download sequence Send to blast
MLANTLSPSS LPSSDPFSCT ENGTSSTKKR KRRPAGTPDP DAEVVSLSPK TLLESDRYVC 60 EICNQGFQRD QNLQMHRRRH KVPWKLLKRE TPVVRKRVFV CPEPTCLHHD PCHALGDLVG 120 IKKHFRRKHS NHKQWVCERC SKGYAVQSDY KAHLKTCGTR GHSCDCGRVF SRVESFIEHQ 180 DACNMGRILH SESQPLQTPT ACLSRTASSP SPSSETNFIT CPWQTRLQII PKEPTIFMNP 240 ISPITPTTTI STTPSQIFSK NNKVVLHPNL ELQLSTTSSK SIDLGASSSS PKRHDHMQKV 300 INQSTQLHLS IGSTNMSQKN NIESNNIIRN SNSSPKESSN SSEKVSTTTT SMALLRVQEQ 360 AREQLRIAIV EKAYAEEARK QAKKQIEMAE QEFNNAKRIR QQAQGELDKA YGLKNHATKQ 420 INSTMLQITC QACKQQFQQD DNNNNNNSLV LSYVSSAITT EGGEVENDDG KGKTTT

Sequence ? help Back to Top

Protein Sequence Length: 476 aa Download sequence Send to blast

MLANTLSPSS LPSSDPFSCT ENGTSSTKKR KRRPAGTPDP DAEVVSLSPK TLLESDRYVC  60
EICNQGFQRD QNLQMHRRRH KVPWKLLKRE TPVVRKRVFV CPEPTCLHHD PCHALGDLVG  120
IKKHFRRKHS NHKQWVCERC SKGYAVQSDY KAHLKTCGTR GHSCDCGRVF SRVESFIEHQ  180
DACNMGRILH SESQPLQTPT ACLSRTASSP SPSSETNFIT CPWQTRLQII PKEPTIFMNP  240
ISPITPTTTI STTPSQIFSK NNKVVLHPNL ELQLSTTSSK SIDLGASSSS PKRHDHMQKV  300
INQSTQLHLS IGSTNMSQKN NIESNNIIRN SNSSPKESSN SSEKVSTTTT SMALLRVQEQ  360
AREQLRIAIV EKAYAEEARK QAKKQIEMAE QEFNNAKRIR QQAQGELDKA YGLKNHATKQ  420
INSTMLQITC QACKQQFQQD DNNNNNNSLV LSYVSSAITT EGGEVENDDG KGKTTT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	6e-18	133	184	5	56	Zinc finger protein JACKDAW
5b3h_F	6e-18	133	184	5	56	Zinc finger protein JACKDAW
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	27	32	KKRKRR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor regulating starch metabolism by binding directly to the promoter of QQS (PubMed:21556057). The IDD14beta isoform attenuates the transcription factor activity by competitively forming heterodimers with reduced DNA-binding capacity(PubMed:21556057). Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Has a redundant role with IDD16 in directing leaf and floral organ morphogenesis (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269\|PubMed:21556057, ECO:0000269\|PubMed:24039602}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004513329.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by auxin. {ECO:0000269\|PubMed:24039602}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004513329.1	0.0	zinc finger protein SHOOT GRAVITROPISM 5-like
Swissprot	Q9C9X7	1e-136	IDD14_ARATH; Protein indeterminate-domain 14
TrEMBL	A0A1S2Z1J4	0.0	A0A1S2Z1J4_CICAR; zinc finger protein SHOOT GRAVITROPISM 5-like
STRING	XP_004513329.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1769	32	89

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01940.1	1e-117	C2H2-like zinc finger protein

Publications ? help Back to Top
Arendsee ZW,Li L,Wurtele ES Coming of age: orphan genes in plants. Trends Plant Sci., 2014. 19(11): p. 698-708 [PMID:25151064] Qu Y, et al. Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis. J. Exp. Bot., 2017. 68(17): p. 4851-4867 [PMID:28992128]