 |
Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
XP_004513327.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
|
| Family |
BBR-BPC |
| Protein Properties |
Length: 288aa MW: 31892.6 Da PI: 10.2564 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_004513327.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 350.6 | 3.5e-107 | 1 | 288 | 1 | 301 |
GAGA_bind 1 mdddgsre.rnkgyyepaaslkenlglqlmssiaerdaki.rernlalsekkaavaerd.........maflqrdkalaernkalverdnkllal 84
md d+ + rn+gyyep +s+k++lglqlmss++e+ +++ + ls+ ++a+++rd m++ +rd+++++ +rdnk++++
XP_004513327.1 1 MDGDNGLNiRNWGYYEPVSSFKSHLGLQLMSSMPEKPLLGgHNAAV-LSGGNGAFHHRDiglpqttypMDY-MRDAWISS------QRDNKYMNM 87
888888888*************************998766466666.************************.********......9******** PP
GAGA_bind 85 llvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvk 179
++ ++ +g++ +++t+s++++q+++ p+l ++ +++ a+p++ +k++ + kkrq k+pk++kakk+k+ ++++k +++
XP_004513327.1 88 NMIPTN------PGYSGIPETSSAHHIQMIQPPELLKEERPTE----DAAPPVV-----EKTNGTGKKRQGLKVPKSPKAKKPKRGPRDPK-DEN 166
**9886......89999************66555554444422....2334444.....45566677788899************777775.555 PP
GAGA_bind 180 kesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaa 274
+ s++++ + +kk++++++ng++lD+s++P+PvCsCtG+++qCY+WG+GGWqSaCCtt+iS+yPLP+stkrrgaRiagrKmS gafkk+LekLaa
XP_004513327.1 167 TRSVPRTPRVPKKTTEIAINGIDLDISSIPIPVCSCTGTPQQCYRWGSGGWQSACCTTAISIYPLPMSTKRRGARIAGRKMSIGAFKKVLEKLAA 261
56667899*************************************************************************************** PP
GAGA_bind 275 eGydlsnpvDLkdhWAkHGtnkfvtir 301
eGy++snp+DL+++WAkHGtnkfvtir
XP_004513327.1 262 EGYNFSNPIDLRTYWAKHGTNKFVTIR 288
**************************8 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0050793 | Biological Process | regulation of developmental process |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 288 aa
Download sequence Send
to blast |
MDGDNGLNIR NWGYYEPVSS FKSHLGLQLM SSMPEKPLLG GHNAAVLSGG NGAFHHRDIG 60
LPQTTYPMDY MRDAWISSQR DNKYMNMNMI PTNPGYSGIP ETSSAHHIQM IQPPELLKEE 120
RPTEDAAPPV VEKTNGTGKK RQGLKVPKSP KAKKPKRGPR DPKDENTRSV PRTPRVPKKT 180
TEIAINGIDL DISSIPIPVC SCTGTPQQCY RWGSGGWQSA CCTTAISIYP LPMSTKRRGA 240
RIAGRKMSIG AFKKVLEKLA AEGYNFSNPI DLRTYWAKHG TNKFVTIR
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}. |
