PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004513250.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB
Protein Properties Length: 296aa    MW: 31743.2 Da    PI: 6.8035
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004513250.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.63.8e-101154344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                      W+ e d+ + +a + ++ +   +W++Ia+ ++ g+t +++k ++
   XP_004513250.1 11 EWSREQDKAFENALATYPEDasdRWEKIAADVP-GKTMEEIKQHY 54
                     6********************************.**********9 PP

2Myb_DNA-binding422.2e-13122166347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT++E+ l++ +  ++G+g+W++I+r +  +Rt+ q+ s+ qky
   XP_004513250.1 122 AWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKY 166
                      6*******************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.047762IPR017884SANT domain
SMARTSM007175.4E-9860IPR001005SANT/Myb domain
CDDcd001677.36E-101154No hitNo description
Gene3DG3DSA:1.10.10.601.3E-51155IPR009057Homeodomain-like
PfamPF002492.1E-81155IPR001005SANT/Myb domain
SuperFamilySSF466891.45E-111165IPR009057Homeodomain-like
PROSITE profilePS5129417.581114171IPR017930Myb domain
SuperFamilySSF466891.27E-16117172IPR009057Homeodomain-like
TIGRFAMsTIGR015572.6E-17119169IPR006447Myb domain, plants
SMARTSM007173.2E-10119169IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-10122165IPR009057Homeodomain-like
PfamPF002492.7E-11122166IPR001005SANT/Myb domain
CDDcd001678.46E-10122167No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MTVDEVESIS EWSREQDKAF ENALATYPED ASDRWEKIAA DVPGKTMEEI KQHYEFLVDD  60
VNQIEAGCVP IPSYNSSSEG STSHASDEGV GKKGGLNGNN NSESNHGTKA SRSDQERRKG  120
IAWTEDEHRL FLLGLDKYGK GDWRSISRNF VVTRTPTQVA SHAQKYFIRL NSMNKDRRRS  180
SIHDITSVNN GDVSTPQGPM TGQTNGSAGN SAGKSIKQVP TSTTGVPGAG IYAAPTIGQP  240
IGGPLVSAVG TPVNLSGPPH MAYGIRAPVP GTVVPGAPMN MVPMSYPMPH TSAPHR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-1812771176RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00500DAPTransfer from AT5G08520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004513250.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004513249.10.0transcription factor SRM1
RefseqXP_004513250.10.0transcription factor SRM1
SwissprotQ9FNN61e-129SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A1S2Z1E00.0A0A1S2Z1E0_CICAR; transcription factor SRM1
STRINGXP_004513249.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.11e-117MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]