PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004513209.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB
Protein Properties Length: 301aa    MW: 34230.5 Da    PI: 6.5117
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004513209.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.52.3e-111763248
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     g W +eEd +    v ++G+ +W++I+++ g +R++k+c++rw++y+
   XP_004513209.1 17 GVWIAEEDTKTPTFVLEHGSSNWTSIPKKTGVKRCGKSCRLRWNNYM 63
                     6799999999999******************99************97 PP
2Myb_DNA-binding409.2e-1369111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +++T +E++l++++++  G++ W+ Ia+ ++ gRt++++k+ w++
   XP_004513209.1  69 DNFTSQEEDLIIKLHAAIGSR-WSIIAQQLP-GRTDNDVKNNWNT 111
                      689******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500909.5581163IPR017877Myb-like domain
SuperFamilySSF466899.94E-2314109IPR009057Homeodomain-like
SMARTSM007177.2E-51565IPR001005SANT/Myb domain
PfamPF002491.7E-101762IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.6E-171872IPR009057Homeodomain-like
CDDcd001672.65E-61963No hitNo description
PROSITE profilePS5129420.82563117IPR017930Myb domain
SMARTSM007171.1E-1067115IPR001005SANT/Myb domain
CDDcd001678.48E-870113No hitNo description
PfamPF002492.0E-1170111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.8E-2073117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MVRSACYEKD SVKIKSGVWI AEEDTKTPTF VLEHGSSNWT SIPKKTGVKR CGKSCRLRWN  60
NYMPDLKHDN FTSQEEDLII KLHAAIGSRW SIIAQQLPGR TDNDVKNNWN TKLKKKLSQM  120
GIDPVTHKPF SKLIADYGNI GTSFHKPTTQ IEVANKDFRN YAILLKSDPY QFNQQQTLQT  180
TGNSSFMVTK SHSDDDFSIV KGDSNCTNIK NETNPTLVDA FPPFSWNDFL LEDAFAPPTN  240
NQEQQILFSK ENVMSQNGKM KEAMSHQVSS CSDISFVEAI LDQENEMFLS FPHLLEEPSN  300
Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-23171178108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004513209.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150352e-50AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004513209.10.0transcription factor MYB35-like
TrEMBLA0A1S2Z1B30.0A0A1S2Z1B3_CICAR; transcription factor MYB35-like
STRINGXP_004513209.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29423474
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28470.16e-56MYB family protein