PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004513203.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | ERF | ||||||||
Protein Properties | Length: 241aa MW: 27275 Da PI: 9.706 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.4 | 9.7e-20 | 103 | 153 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp + k r++lg+f ta eAa+a+++a+ +++g XP_004513203.1 103 HYRGVRRRP-WGKYAAEIRDP---NrKGSRVWLGTFETAVEAARAYDKAAFQMRG 153 8********.**********9...6566*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.84E-32 | 102 | 161 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 2.5E-33 | 102 | 162 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.09E-23 | 103 | 163 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 7.4E-14 | 103 | 153 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.421 | 103 | 161 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.6E-38 | 103 | 167 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.2E-11 | 104 | 115 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.2E-11 | 127 | 143 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MQQTFESTFS FCNSNILEDQ NSISESLIIS DYFKHPQQFP INMSQTQIPQ TSFSKPPKQS 60 SNLSNRKPSL NITIPSSITK LPLSQQNIEK SDKTKNTKEE EKHYRGVRRR PWGKYAAEIR 120 DPNRKGSRVW LGTFETAVEA ARAYDKAAFQ MRGSKAILNF PLEVASISTC IKVGEKRQID 180 EGSNYAEINN NNHKKVKKEE GVSTICPLTP SCWKGFWDTD VMGTIFSVPP LSPLSPLMMG 240 Y |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 9e-33 | 102 | 164 | 1 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 1e-32 | 102 | 166 | 4 | 68 | ATERF1 |
3gcc_A | 1e-32 | 102 | 166 | 4 | 68 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase/phosphatase cascade, and to be influenced by methyl-jasmonate. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:10792818, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}. | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00556 | DAP | Transfer from AT5G51190 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004513203.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Strongly induced by ethephon (ethylene-releasing compound) in buds and in leaves. Also strongly induced by cycloheximide, mechanical stimuli. Wounding leads to a both local and systemic expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Wound induction is reduced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by a protein kinase cascade, and to be negatively regulated by protein phosphatases. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:12090623, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX034738 | 0.0 | JX034738.1 Cicer arietinum ethylene-responsive factor 1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001296583.1 | 1e-178 | ethylene-responsive transcription factor ERF1 | ||||
Swissprot | Q40478 | 7e-53 | ERF5_TOBAC; Ethylene-responsive transcription factor 5 | ||||
Swissprot | Q8VY90 | 3e-53 | EF105_ARATH; Ethylene-responsive transcription factor ERF105 | ||||
TrEMBL | I7DM20 | 1e-177 | I7DM20_CICAR; Ethylene-responsive factor 1 | ||||
STRING | XP_004513203.1 | 1e-180 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1085 | 34 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51190.1 | 2e-50 | ERF family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 101492500 |
Publications ? help Back to Top | |||
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