PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004513134.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | HRT-like | ||||||||
Protein Properties | Length: 393aa MW: 44364 Da PI: 9.6254 | ||||||||
Description | HRT-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HRT-like | 59.3 | 6.3e-19 | 266 | 296 | 1 | 31 |
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCGvil+dGs+C+r+P+++R RC eHKGmRi XP_004513134.2 266 ICGVILNDGSICTRPPIEKRVRCFEHKGMRI 296 8*****************************7 PP | |||||||
2 | HRT-like | 58.5 | 1.1e-18 | 323 | 353 | 1 | 31 |
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCG+il+d s+C++qPvkgR+RC+eHKGmR+ XP_004513134.2 323 ICGIILDDSSTCSKQPVKGRQRCHEHKGMRT 353 8*****************************5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00465 | 1.8E-4 | 75 | 174 | IPR000305 | GIY-YIG nuclease superfamily |
Sequence ? help Back to Top |
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Protein Sequence Length: 393 aa Download sequence Send to blast |
MMVINRLKRE QCDHTKHDSS FSDWKILIGP SDWEDHSKGK EGCSRYRIPN LPQTFGPGVY 60 ELGIVVSRNY LGREIYKFAT DPCKVVVVYL GKAENVSARL QCYGRNGAHL SNASSSIESS 120 SSTLMRHSLF HHIFSKGYPI VYRWAPMENN SDALKTEAKL LDTFDYGWNT INNGRRRPYD 180 ILQMLDKIAS TTVTFSYVAK SLIPFIQNKV GIPIKSNKFP KTYDKSDEVD NYGSYRFLSK 240 IFKFNRSHPM IIQNSTSGAI EKYGKICGVI LNDGSICTRP PIEKRVRCFE HKGMRINVFN 300 AKAIGAPKLE LEIIDESITK TIICGIILDD SSTCSKQPVK GRQRCHEHKG MRTNVSNAKA 360 IRAPKLESEI IDDSISKTII CGIILNDGST CRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004513134.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004513134.2 | 0.0 | protein EFFECTOR OF TRANSCRIPTION 2-like | ||||
TrEMBL | A0A1S2Z164 | 0.0 | A0A1S2Z164_CICAR; protein EFFECTOR OF TRANSCRIPTION 2-like | ||||
STRING | XP_004513134.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9409 | 31 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56780.1 | 8e-85 | effector of transcription2 |