PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004512974.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | HSF | ||||||||
Protein Properties | Length: 332aa MW: 37541.6 Da PI: 4.7741 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 109.8 | 2e-34 | 13 | 104 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 F++k+y++++d+++++li+w +nsf+vld+ +f++++Lp +Fkh+nf+SFvRQLn+YgF+kv+ ++ weF++++F +g+k+ll++ XP_004512974.1 13 FVMKTYQMVNDQTTDNLIKWGPANNSFIVLDPLDFSHSLLPVFFKHNNFSSFVRQLNTYGFRKVDPDK---------WEFANEWFLRGQKHLLKN 98 9********************999*****************************************999.........****************** PP XXXXXX CS HSF_DNA-bind 97 ikrkks 102 i rkk+ XP_004512974.1 99 IARKKH 104 ***985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 1.6E-52 | 9 | 102 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 9.66E-33 | 10 | 102 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 3.5E-36 | 10 | 102 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 1.2E-17 | 13 | 36 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 2.1E-29 | 13 | 102 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.2E-17 | 51 | 63 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 52 | 76 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.2E-17 | 64 | 76 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 332 aa Download sequence Send to blast |
MGGMEQNNVI APFVMKTYQM VNDQTTDNLI KWGPANNSFI VLDPLDFSHS LLPVFFKHNN 60 FSSFVRQLNT YGFRKVDPDK WEFANEWFLR GQKHLLKNIA RKKHVGGKIN NSNYNYFNDV 120 KFEDLDEDEA MVTEIAKLKE EQKTLEEELQ RMNNRLETTE KRPQQMMAFL CNVVEDPQIL 180 SRILVEREKE KVIDKKKPRL ILPETAAMTA ATTSTSSSSS GMAVVNSVKT EFEEDEVTVA 240 YNMMSLSPET GFEIDYFRRE PPPAVAPVVG WWGQTQIGQM GYGCDSTVAP TPLTVVSPAA 300 APELGRVGIF SEMAAENNSL PPYPFSLLEG GF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 9e-24 | 2 | 102 | 19 | 129 | Heat shock factor protein 1 |
5d5v_B | 9e-24 | 2 | 102 | 19 | 129 | Heat shock factor protein 1 |
5d5v_D | 9e-24 | 2 | 102 | 19 | 129 | Heat shock factor protein 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00379 | DAP | Transfer from AT3G24520 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004512974.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004512974.1 | 0.0 | heat stress transcription factor C-1 | ||||
Swissprot | Q9LV52 | 8e-83 | HSFC1_ARATH; Heat stress transcription factor C-1 | ||||
TrEMBL | A0A1S2Z0S8 | 0.0 | A0A1S2Z0S8_CICAR; heat stress transcription factor C-1 | ||||
STRING | XP_004512974.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8367 | 30 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24520.1 | 1e-75 | heat shock transcription factor C1 |
Publications ? help Back to Top | |||
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