PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004512963.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | Trihelix | ||||||||
Protein Properties | Length: 384aa MW: 44673.6 Da PI: 4.2736 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 43.2 | 1.1e-13 | 136 | 223 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86 +W ++ + +L+e+ e+ +l+r++l+ W ev++k+ +e ++er+ qC++ ++++++rykk+k ++ + ss ++p+f++++ XP_004512963.1 136 EWNEHGTFVLLEIWGEKFLQLGRNSLRSEEWHEVAEKVsEELKVERNVSQCRSVLDKVKRRYKKEKSRMDEMgLGVSSCKWPFFKKMD 223 5*************************************8889*************************9999856778889*******8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 1.3E-17 | 135 | 225 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 384 aa Download sequence Send to blast |
MDDMEDDARY PSKGYPLRRK NPNLRQKHPI RTLQYHHPPT LRYNDPDHNN NNIEEDYEDE 60 EPEEFDDYNV DEEDEDGIEN GYIGNFDENE GFIRKKRKIR SGSGSSSVSN YDLMPRGKFS 120 YVNRGSGGGS SSVSEEWNEH GTFVLLEIWG EKFLQLGRNS LRSEEWHEVA EKVSEELKVE 180 RNVSQCRSVL DKVKRRYKKE KSRMDEMGLG VSSCKWPFFK KMDMLMSSSA RQEYGLACGV 240 DSGEFVFMNT RVYLNRSNGF DEMRDSPGES ETSEDDEDDD EDDDFDGVRG GGGDEEEDEV 300 DKEEEEASYR VLADSIQKFG KIYEKIENTK RQQMMELEKM RMDFNRELEL QKKQILERTQ 360 AEISKMQEVG DDDDTDTSAD NLSE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004512963.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC202341 | 1e-130 | AC202341.28 Medicago truncatula clone mth2-24i7, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004512963.1 | 0.0 | trihelix transcription factor ASIL2 | ||||
TrEMBL | A0A1S2Z0R9 | 0.0 | A0A1S2Z0R9_CICAR; trihelix transcription factor ASIL2 | ||||
STRING | XP_004512963.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2441 | 34 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24490.1 | 2e-78 | Trihelix family protein |