PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004512906.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB
Protein Properties Length: 280aa    MW: 31979.1 Da    PI: 8.7187
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004512906.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.81.4e-142067148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W  eEd++l++ ++ +G g+W+  a   g++Rt+k+c++rw++yl
   XP_004512906.1 20 RGPWALEEDDILIKNIANHGEGRWNFLAMSSGLRRTGKSCRLRWLNYL 67
                     89********************************************97 PP
2Myb_DNA-binding47.54.2e-1573116146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T eE +l+ +++ ++G++ W++ a++++ gRt++++k++w++
   XP_004512906.1  73 RGNITSEEKLLIFELHSKWGNK-WSKMAQHLP-GRTDNEIKNYWRT 116
                      7999******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.0E-201470IPR009057Homeodomain-like
PROSITE profilePS5129423.0081571IPR017930Myb domain
SuperFamilySSF466897.81E-2818114IPR009057Homeodomain-like
SMARTSM007172.6E-121969IPR001005SANT/Myb domain
PfamPF002497.5E-132067IPR001005SANT/Myb domain
CDDcd001677.22E-92267No hitNo description
Gene3DG3DSA:1.10.10.608.4E-2371122IPR009057Homeodomain-like
SMARTSM007173.8E-1372120IPR001005SANT/Myb domain
PROSITE profilePS5129418.08972122IPR017930Myb domain
PfamPF002491.7E-1373116IPR001005SANT/Myb domain
CDDcd001676.74E-1077116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MSNPSKSVQY CSKDDNELRR GPWALEEDDI LIKNIANHGE GRWNFLAMSS GLRRTGKSCR  60
LRWLNYLKPD VKRGNITSEE KLLIFELHSK WGNKWSKMAQ HLPGRTDNEI KNYWRTQIQK  120
QVKHLKLDID RRKFLRSVSP LKTITCQQKS KESSHSITMT IQNQAIHLPF DGVSSSHYSS  180
IGTIPTQVSC KEACMNEGVS NNGLCMSTSK STNLTQHLGY TTTQIQPLEN NEFGICGYDG  240
YYINNNSLNL TTTMVAEDFQ ISESNWLDKD FACTSIWGIN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-25171221105MYB PROTO-ONCOGENE PROTEIN
1h88_C1e-241712255159MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-241712255159MYB PROTO-ONCOGENE PROTEIN
1h8a_C4e-251712224128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004512906.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004512906.10.0transcription factor MYB21-like
TrEMBLA0A1S2Z0L50.0A0A1S2Z0L5_CICAR; transcription factor MYB21-like
STRINGXP_004512906.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16393494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.14e-61myb domain protein 62