PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004512905.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family bHLH
Protein Properties Length: 270aa    MW: 30592.4 Da    PI: 6.8556
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004512905.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.71.5e-06163210455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR +i +++  L+ ++P +     k +  a +L + ++Y++sLq
  XP_004512905.1 163 SHSLAERVRRGKISEKLRCLQNMVPGC----YKTMGMAVMLDEIINYVQSLQ 210
                     8*************************9....35599999**********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.59E-15157226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.60E-8157214No hitNo description
Gene3DG3DSA:4.10.280.102.3E-14159218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.259159209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-6165215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MAEFTENFQN IIRPSFPFLD SDQSMELLNQ FIGINQHVMD NSNMNMQNLM SFSSDSILCP  60
SQQEFPGNLE EDFHHGLVHH HNAVQVSVPN FEVGNKVHDA KKRKIMDFQE TSSANSTLAV  120
SESGSKTKLN GGRGKRVKNY GTEEEKAKEV VHVRARRGQA TDSHSLAERV RRGKISEKLR  180
CLQNMVPGCY KTMGMAVMLD EIINYVQSLQ HQVEFLSLKL TAASTYYDFN SETDDLETMQ  240
KARASEAKEL GRYKREGYGG ISCFQPTWPL
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of brassinosteroid signaling. {ECO:0000269|PubMed:12454087}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004512905.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by brassinosteroid, auxin and ethylene, and repressed by abscisic acid. Insensitive to gibberellic acid. {ECO:0000269|PubMed:12454087}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004512905.10.0transcription factor BEE 3-like
SwissprotQ8GWK74e-64BEE3_ARATH; Transcription factor BEE 3
TrEMBLA0A1S2Z0M50.0A0A1S2Z0M5_CICAR; transcription factor BEE 3-like
STRINGXP_004512905.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33603467
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73830.12e-66BR enhanced expression 3
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]