PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004512740.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB
Protein Properties Length: 1062aa    MW: 119207 Da    PI: 7.041
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004512740.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.52e-10474516346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       WT+eEd +l  av+ +G  +W ++a+ +  +R + qc +rw k
   XP_004512740.1 474 EWTEEEDAQLCSAVACFGESNWQSVASVLE-RRAGTQCSNRWKK 516
                      7*****************************.***********98 PP
2Myb_DNA-binding40.27.7e-13523566146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g++T+eEd++l  av ++G + W+ Ia+ ++ gR   qc++r+++
   XP_004512740.1 523 KGSFTPEEDKRLTIAVMLFGRK-WNQIAKFVP-GRIQSQCRDRYLN 566
                      799*****************99.*********.***********98 PP
3Myb_DNA-binding45.61.6e-14576616345
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                       WT+eEd++l  a++++G   W+++a+ ++  Rt+ qc+ rw 
   XP_004512740.1 576 GWTEEEDLRLEAAITKYGYC-WSKVAEDVP-PRTDSQCRKRWK 616
                      5*****************99.*********.9**********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500905.715315411IPR017877Myb-like domain
SMARTSM007170.0057319415IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-10322338IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.2E-10386420IPR009057Homeodomain-like
SuperFamilySSF466894.03E-12395449IPR009057Homeodomain-like
PROSITE profilePS500908.664414466IPR017877Myb-like domain
SMARTSM007172.4E-4418468IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-10421474IPR009057Homeodomain-like
PfamPF139216.8E-11422483No hitNo description
SuperFamilySSF466891.79E-16450518IPR009057Homeodomain-like
PROSITE profilePS5129415.134467522IPR017930Myb domain
SMARTSM007173.4E-6471520IPR001005SANT/Myb domain
CDDcd001673.53E-8474518No hitNo description
Gene3DG3DSA:1.10.10.602.2E-13475520IPR009057Homeodomain-like
SuperFamilySSF466892.16E-22520615IPR009057Homeodomain-like
SMARTSM007171.2E-11522570IPR001005SANT/Myb domain
PROSITE profilePS5129410.953523568IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.1E-19524575IPR009057Homeodomain-like
CDDcd001671.51E-7525568No hitNo description
PfamPF139212.7E-13526585No hitNo description
PROSITE profilePS5129422.164569623IPR017930Myb domain
SMARTSM007176.8E-12573621IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.0E-16576619IPR009057Homeodomain-like
CDDcd001671.75E-11577616No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1062 aa     Download sequence    Send to blast
MTPRTDDYEQ DNDNLSATDC DDDDDDYGLK EDMAALARAC MVTGDEIPPP EDPLLASGDA  60
IVPFTVTADS DEDEQSDLEC LKRVQSLYQP PDSLPTPQIG LSDDDEDDFE TVRAIFKRFS  120
AYDGGGREAW AEGGQAPSLI SEQEVAKSSI SDKSDDGELC PDSQYHDNDT KLLTETCGFD  180
ETCEDDATAS LSSKLPKNRS SFPPSAQAFI DAVKKNRALQ KFLRSKLIEI EAKIEENKKI  240
RDKVKLLKDF QVSCSRKTGN ALSLKKDPRV QLISSKKSIA TNKSKSHNKK VSAMCYGPEE  300
NSRVANYKMV LERFPLSLDR KKWSNKEREN LSKGIKQQFQ ETVLQISVDR MSSECSPGDA  360
NDMDSIIESV KGLDITPGRI REFLPKVNWD RLASMYVTGR TGAECESRWL NCEDPLINHD  420
PWTGEEDRSL LIIIQEIGIR NWFDIAVSLA TNRIPFQCLA RYQRSLNPSM LNSEWTEEED  480
AQLCSAVACF GESNWQSVAS VLERRAGTQC SNRWKKSLCP VRKGSFTPEE DKRLTIAVML  540
FGRKWNQIAK FVPGRIQSQC RDRYLNSLDP SLKWGGWTEE EDLRLEAAIT KYGYCWSKVA  600
EDVPPRTDSQ CRKRWKVICP EQVSLLQEAR KRQKSLLACN FVDRESERPA ITLNDFIPLQ  660
MVAPSSDVSA ENLQRKRKRK SSVHNKERSK KHAEDAELCP EEVQDAVPKR ERPKRHATKA  720
SIFSEEVQDT VPKKEKPKRQ SKKARICPEE VQYIAAYGAK VKTCGGGVPF FAQNNVPKKM  780
RSKRCAKKAP IHPEKVENIG CSDKVKVCIE SKSQDGDNIT LACFLRNKSK RVKRLSKRTK  840
NENQTSSSSR KKIVSKQVEN QIPSDDQGGF SLPCGIGGTQ DLLVSKEVAS SRQVKKPEDA  900
NAARKSEDAH NLIGDDDDDM TLNCFVRNKT NKLSQTTKRR RASSSSKSKK GTILLHGNKP  960
TLISDGSEPS LSKVVEEETV LHGGVAESEP INMNVVEDKT ILHGSVAEAE PTNINVVEEE  1020
SVLHNGVAGA EPTNIHVEEE DDLLLSFLQN KTRRRKRLTQ YS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C4e-273916157155MYB PROTO-ONCOGENE PROTEIN
1h89_C4e-273916157155MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1611633RKRWKVICPEQVSLLQEARKRQK
2674679RKRKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004512740.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004512740.10.0uncharacterized protein LOC101490682 isoform X2
TrEMBLA0A1S2Z0890.0A0A1S2Z089_CICAR; uncharacterized protein LOC101490682 isoform X2
STRINGXP_004512739.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18100.10.0myb domain protein 4r1