PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004512545.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | bHLH | ||||||||
Protein Properties | Length: 327aa MW: 36751.7 Da PI: 4.8001 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.8 | 6.9e-12 | 161 | 204 | 6 | 54 |
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr+++Pk + K++ +iL +++Y+k+L XP_004512545.1 161 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDTIDYMKEL 204 589*********************66......****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.491 | 155 | 204 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.44E-15 | 158 | 224 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.2E-12 | 161 | 210 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.3E-9 | 161 | 204 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.16E-5 | 162 | 208 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 8.9E-16 | 162 | 225 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd04873 | 4.27E-4 | 253 | 294 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 327 aa Download sequence Send to blast |
MELSQLGFLD ELLAPRKDTW NALSTTGLNE LLLPTCCYTF DSFDENLLNN PSLNPSFASF 60 STPLDHRFEC SYGTDATTPS YPFVDAFTVP EFDESAPLLP SMEDEAFGGF LGTESNKSFE 120 QTKINCKVEE HVNEIPVFNM GLCGEKKQKS KRVEGQPSKN LMAERRRRKR LNDRLSMLRS 180 IVPKISKMDR TSILGDTIDY MKELLERIGK LQEEVEDGTN QINLLGISKE LKPNEVMVRN 240 SPKFDVERRD QDTRISICCA TKPGLLLSTV NTLEALGLEI HQCVISSFND FSLQASCSEA 300 AGQRNCMNPE EIKQSLFRNA GYGGRCL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 163 | 170 | ERRRRKRL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004512545.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT094423 | 1e-177 | BT094423.1 Soybean clone JCVI-FLGm-18L15 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004512545.1 | 0.0 | transcription factor bHLH93-like isoform X1 | ||||
Swissprot | Q9LSL1 | 2e-85 | BH093_ARATH; Transcription factor bHLH93 | ||||
TrEMBL | A0A1S2YZW0 | 0.0 | A0A1S2YZW0_CICAR; transcription factor bHLH93-like isoform X1 | ||||
STRING | XP_004512545.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1186 | 34 | 103 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65640.1 | 2e-87 | beta HLH protein 93 |
Publications ? help Back to Top | |||
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