PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004512512.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB
Protein Properties Length: 318aa    MW: 36088.7 Da    PI: 7.5303
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004512512.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding62.96.4e-201461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEde+l+d+++++G g+W + +++ g++R++k+c++rw +yl
   XP_004512512.1 14 KGPWTEEEDEKLIDYINKHGHGNWGSLSKRAGLNRCGKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding54.43e-1767110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg++T eE+ ++++++  lG++ W++Ia +++ gRt++++k++w++
   XP_004512512.1  67 RGKFTDEEERIIINLHSVLGNK-WSKIATHLP-GRTDNEIKNFWNT 110
                      89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.3E-26564IPR009057Homeodomain-like
PROSITE profilePS5129418.469961IPR017930Myb domain
SuperFamilySSF466891.26E-3211108IPR009057Homeodomain-like
SMARTSM007178.7E-181363IPR001005SANT/Myb domain
PfamPF002491.7E-181461IPR001005SANT/Myb domain
CDDcd001676.77E-141661No hitNo description
PROSITE profilePS5129427.38462116IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.1E-2665116IPR009057Homeodomain-like
SMARTSM007172.3E-1666114IPR001005SANT/Myb domain
PfamPF002491.5E-1567110IPR001005SANT/Myb domain
CDDcd001677.45E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MGRSPCCDEI GVKKGPWTEE EDEKLIDYIN KHGHGNWGSL SKRAGLNRCG KSCRLRWTNY  60
LRPDIKRGKF TDEEERIIIN LHSVLGNKWS KIATHLPGRT DNEIKNFWNT NIRKKLLKMG  120
IDPETHKPRT DYNHLMSLSN LLGMSNIGTA FGNNPLGLHQ DITHLAKIQL LQNMLQIMNT  180
NNSFVNMSNP YNPLGNNIPS LNPFNMFLSG TNTIQTKEEY AMSSLYSNGQ SELSQQAVSI  240
GGLNLQEIDY SKMKSISCEN REEIPLPSLV ASSPRKGTFK QIESGCDKAQ TSNNTIFDDW  300
EKFLDDESNG SYWKELLE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-32141167108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004512512.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCR9541951e-109CR954195.3 Medicago truncatula chromosome 5 clone mth2-16p13, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004512511.10.0transcription factor MYB39
TrEMBLA0A1S2YZT90.0A0A1S2YZT9_CICAR; transcription factor MYB39
STRINGXP_004512511.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.24e-90myb domain protein 9