PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004512502.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family HSF
Protein Properties Length: 500aa    MW: 55177.2 Da    PI: 4.5675
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004512502.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.41.5e-35331242102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+y++++d+ ++ ++sws+++nsfvv+d+ efa+++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+ll++
  XP_004512502.1  33 FLSKTYDMVDDPLTDAVVSWSATNNSFVVWDPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKHLLKS 118
                     9********************999*****************************************999.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     i r+k 
  XP_004512502.1 119 ITRRKP 124
                     ***986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.8E-3926117IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.31E-3528122IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.2E-6229122IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004477.5E-3233122IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-193356IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-197183IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043407296IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-198496IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MDGASGSSAG GEGTSAQLPV PTPISNANAP PPFLSKTYDM VDDPLTDAVV SWSATNNSFV  60
VWDPPEFARD LLPKYFKHNN FSSFVRQLNT YGFRKVDPDR WEFANEGFLR GQKHLLKSIT  120
RRKPAHGHNN QQAQQPHGQS SSVGACVEVG KFGLEEEVER LKRDKNVLMQ ELVRLRQQQQ  180
ATDSQMQGMV QRLQGMEQRQ QQMMSFLAKA VQSPGFFAQF VQQQNDSNRR ITEVSKKRRL  240
KQEGIAETTE RASPPDGQIV KYQPLMNEAA KSMLRQIMKW DTSRVESFNK NPDNYLIRDG  300
TSPSNAMDSS SSSSWNSGVT LQEVPPSSVQ SSQIPSATGT QGHVPSAEKP DILSVPQAAA  360
SQNVMNDGAH TAPSIPNSQA DVGMPDIPSI PEIVPRSILD IAEDSYMASE TDEGFMGVDG  420
SFPIDFEGLS PGADIDDLLS NPSIWDDLLQ TPVPEDIVTN VDEICNGNEV QPTENGWDKT  480
QHLDQLTEQM GLLSSDRERI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B7e-2831221129Heat shock factor protein 1
5d5v_B7e-2831221129Heat shock factor protein 1
5d5v_D7e-2831221129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1235240KKRRLK
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004512502.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ9072340.0DQ907234.1 Medicago sativa heat shock transcription factor 1 (HSF1) mRNA, HSF1-b1 allele, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004512502.10.0heat shock factor protein HSF8
RefseqXP_004512503.10.0heat shock factor protein HSF8
SwissprotQ401521e-180HSF8_SOLLC; Heat shock factor protein HSF8
TrEMBLA0A1S2YZS60.0A0A1S2YZS6_CICAR; heat shock factor protein HSF8
STRINGXP_004512501.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18433169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32330.11e-146heat shock transcription factor A1D
Publications ? help Back to Top
  1. Zhu B, et al.
    Identification and characterization of a novel heat shock transcription factor gene, GmHsfA1, in soybeans (Glycine max).
    J. Plant Res., 2006. 119(3): p. 247-56
    [PMID:16570125]
  2. Cai SY, et al.
    HsfA1a upregulates melatonin biosynthesis to confer cadmium tolerance in tomato plants.
    J. Pineal Res., 2017.
    [PMID:28095626]
  3. Zhou J, et al.
    Heat Shock Factor HsfA1a Is Essential for R Gene-Mediated Nematode Resistance and Triggers H2O2 Production1.
    Plant Physiol., 2018. 176(3): p. 2456-2471
    [PMID:29339397]