PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004512490.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family G2-like
Protein Properties Length: 395aa    MW: 44584.1 Da    PI: 9.059
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004512490.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.94e-32217270255
         G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  XP_004512490.1 217 PRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 270
                     9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.97E-15214270IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.1E-28215270IPR009057Homeodomain-like
TIGRFAMsTIGR015572.6E-23217270IPR006447Myb domain, plants
PfamPF002492.6E-7218269IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0048481Biological Processplant ovule development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MELFPAQPDL SLQISPPNPN TTSTTKSNWK RTTTRSEDEM DLGFWKRALD SSSSSLANKI  60
DSKTFDLSLS NPTKPSLDFN NTSSNNNLIH HHFQNINHNN NNNNNNNANN PFQSFHQNHY  120
FHQQQQHHQT LFQQQQSLSQ ELGFLRPIRG IPVYQNSSSP MSFSQLHNHH HVLDGSTITN  180
PSSISNTNTT STPFQSQASM RSRFLSRFPA KRSMRAPRMR WTTTLHARFV HAVELLGGHE  240
RATPKSVLEL MDVKDLTLAH VKSHLQMYRT VKTTDRVAGS SGQSDVYDNG SSGDNSDDIM  300
FDINSSRRSD LSIKQQGRSS VNQDKECHGL WSNSSREAWL HGKPKFDSIG NMSSLEEMDP  360
KCLSYERISD GSSSTNLSSP KKPNLDLEFT LGQPL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-17218272458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-17218272458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-17218272458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-17218272458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-17218272458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-17218272458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-17218272458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-17218272458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269|PubMed:11525739, ECO:0000269|PubMed:15286295, ECO:0000269|PubMed:16623911, ECO:0000269|PubMed:17307928}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00174DAPTransfer from AT1G32240Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004512490.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1250380.0EF125038.1 Medicago truncatula MYB transcription factor MYB34 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004512490.10.0probable transcription factor KAN2 isoform X2
SwissprotQ9C6162e-92KAN2_ARATH; Probable transcription factor KAN2
TrEMBLA0A1S2YZS30.0A0A1S2YZS3_CICAR; probable transcription factor KAN2 isoform X2
STRINGXP_004512489.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32240.12e-65G2-like family protein
Publications ? help Back to Top
  1. Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y
    The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis.
    Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71
    [PMID:26108442]