PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004512429.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

C2H2

Protein Properties

Length: 147aa MW: 15883.8 Da PI: 6.7914

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004512429.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.1	0.00014	42	63	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +Cp C++ F ++ H+r+H XP_004512429.1 42 TCPECKREFFTWKAAFGHMRKH 63 6********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	43	63	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 147 aa Download sequence Send to blast
MTADGSGVVV GVGGRGRVRE GGQPLKKRKS NDVKDPPPGK PTCPECKREF FTWKAAFGHM 60 RKHPNRAHRG FFPPPVFSSS STATINPPAP QPIQNEGDGE NRAMEIEAGP SVAAAAAPEP 120 DAEEKIEERK NLGFDLNKMP PNEEDEV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004512429.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004512429.1	1e-103	uncharacterized protein LOC101493386
TrEMBL	A0A1S2YZL9	1e-102	A0A1S2YZL9_CICAR; uncharacterized protein LOC101493386
STRING	XP_004512429.1	1e-103	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10202	21	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35700.1	1e-08	C2H2 family protein