PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004512362.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

Trihelix

Protein Properties

Length: 304aa MW: 36097.7 Da PI: 8.9141

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004512362.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	88.6	6.9e-28	49	130	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++qe+++ i++r e+e+++ ++k++k+lWe vs+kmrerg++rsp+qCk+kw+nl +ryk ++++ ++ ++cp+f++l+ XP_004512362.1 49 QWSQQETREFIAIRAELERDFTASKRNKTLWEVVSSKMRERGYRRSPEQCKCKWKNLVNRYKGKETSDPEH----GKQCPFFEELH 130 7**************************************************************999986....678****98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	1.5E-4	46	108	IPR001005	SANT/Myb domain
Pfam	PF13837	3.1E-24	48	131	No hit	No description
CDD	cd12203	2.98E-27	48	113	No hit	No description
PROSITE profile	PS50090	7.7	50	106	IPR017877	Myb-like domain

Sequence ? help Back to Top
Protein Sequence Length: 304 aa Download sequence Send to blast
MYGVGGDDAL PARLGIVTPS MLIPVTPSMI SRDMSPTPAR EERLPAQPQW SQQETREFIA 60 IRAELERDFT ASKRNKTLWE VVSSKMRERG YRRSPEQCKC KWKNLVNRYK GKETSDPEHG 120 KQCPFFEELH AVFTQRAHNM QRLLLESETR SAQTKKGVKR LSVDRSSEEF SEEDEVEDDS 180 EDERPARSNN RKRKAGKIAM EKPSRAKSTC SSTSDIQDML KEFFQHQLRM EIQWKEIMER 240 RAHERQLFEQ EWRQSMEKLE RERLMIEQAW REREEQRRLR EESRAERRDA LLTTLLNKLI 300 HESN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ebi_A	1e-14	50	120	7	77	DNA binding protein GT-1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004512362.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CU914135	0.0	CU914135.3 Medicago truncatula chromosome 5 clone mth4-3n15, COMPLETE SEQUENCE.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004512362.1	0.0	trihelix transcription factor GT-3b-like
TrEMBL	A0A1S2YZG8	0.0	A0A1S2YZG8_CICAR; trihelix transcription factor GT-3b-like
STRING	XP_004512362.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1781	33	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38250.1	2e-42	Trihelix family protein