PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004512265.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family Nin-like
Protein Properties Length: 1093aa    MW: 122880 Da    PI: 5.2433
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004512265.2genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK83.81.6e-269661015352
          RWP-RK    3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52  
                      ++i+l+dl kyF++pi +A+k+L+v+lTvLKr+CR++GI+RWPhRkiksl
  XP_004512265.2  966 AKITLSDLVKYFDMPIVEASKNLNVGLTVLKRKCREFGIPRWPHRKIKSL 1015
                      78**********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF519051.42E-3416351IPR023753FAD/NAD(P)-binding domain
Gene3DG3DSA:3.50.50.602.7E-301669IPR023753FAD/NAD(P)-binding domain
PfamPF009964.2E-91767IPR018203GDP dissociation inhibitor
PRINTSPR008918.4E-251937IPR018203GDP dissociation inhibitor
PRINTSPR008918.4E-253754IPR018203GDP dissociation inhibitor
Gene3DG3DSA:3.30.519.102.1E-28118171No hitNo description
PfamPF009963.0E-28118442IPR018203GDP dissociation inhibitor
PRINTSPR008918.4E-25140156IPR018203GDP dissociation inhibitor
Gene3DG3DSA:1.10.405.101.1E-27173281No hitNo description
PRINTSPR008918.4E-25190205IPR018203GDP dissociation inhibitor
Gene3DG3DSA:3.50.50.602.7E-30285392IPR023753FAD/NAD(P)-binding domain
PRINTSPR008918.4E-25292313IPR018203GDP dissociation inhibitor
SuperFamilySSF543731.44E-15378492No hitNo description
Gene3DG3DSA:3.30.519.102.1E-28393459No hitNo description
PROSITE profilePS5151919.9649501035IPR003035RWP-RK domain
PfamPF020424.1E-229671015IPR003035RWP-RK domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007264Biological Processsmall GTPase mediated signal transduction
GO:0055114Biological Processoxidation-reduction process
GO:2000541Biological Processpositive regulation of protein geranylgeranylation
GO:0005829Cellular Componentcytosol
GO:0005092Molecular FunctionGDP-dissociation inhibitor activity
GO:0016491Molecular Functionoxidoreductase activity
GO:0017137Molecular FunctionRab GTPase binding
Sequence ? help Back to Top
Protein Sequence    Length: 1093 aa     Download sequence    Send to blast
MTESEESIAY PPIDPVNFDL IIVGTGLSES IIAAATSAVG KTILHLDPNS FYGSHFASLS  60
LEDLTSYLNS PPKSITAATT TTSPNDSDYA ALNLIQKPLY SDAEFIYRDS TDESSFLREN  120
SRKFNLDLGG PRALFSADKT IDLLLKSGAA QYLEFKGIDA SLAYDANEGL MNVPDSRGAI  180
FRDKNLSLKE KNQLMKFFKL VQQHLSDNGD EKISEEDLES PFVSFLEKIQ LPPKIKSILL  240
YAIAMVDFDQ ENSEVCKDLL KTKDGIDRLA LYSSSVGRFP NAPGALLYPI YGEGELPQAF  300
CRRAAVKGCI YVLRMPVISL LMDKANGSYK GIRLASGQDL FSHQLILDPS FTIPSTPSLS  360
PKDISSERLE MLSQRDIKGM VARGICITRS SIKPDVSNCS VVYPPRSLYP DQVTSIRALQ  420
IGSNLAVCPA GTFVLYFSTL CNDADEGKKL LNASVNALLT LPVSGNTESI PILQSDCEDK  480
KPAVLWGAFY IQKLTTGKFE AISSTPTPDG NLNYNELLDA TEKLFGQMYP EEEFFPKVTS  540
PEDTSDDDEN GITLEKIKDT VVQSYRTDPV QVRSWPMVLM FRFPLKAECF LNNNFHLRRI  600
LLSMDTIMAL KVTSFGSNCS SKTFSDSSMF PHLAYISIME LPTTKASDSI PFCLQVPIIE  660
LQELSSFHTM STKALNASPI CLHSEYMWTN ALPTKPEIIE LQTKLSFSSI ESKIFLQELT  720
SPHLAYKSTI ALSTTTSTSA PNLYTSPWIC FTSCKKEQHL SKLTKNSFIH SCYLFKFFFM  780
DSSLTNLLLF NNTIQPELIR SVHVYRECDD DDDVVEEREV EREFVFSESG SYVEMQATPI  840
LNLMKSRLFQ EVFEGYMNGV WLCIFAFHAF NTPPFSHIPT LFLLTRNPKL QAIPNLLNDL  900
QMIYKLDPKE EHKDTPEKKV LPVLDQDLNC LPFEEDESEL PDDETDVESS SGSAGKKKRA  960
PSDHVAKITL SDLVKYFDMP IVEASKNLNV GLTVLKRKCR EFGIPRWPHR KIKSLDSLIH  1020
DLQEEAKHQE MEDKAAAMAV IRRQKMLENE KENIEKKPFM DIQSETKRFR QDVFKRRHRA  1080
RAIEKHNSTV AST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ltx_R4e-37114543215610Rab Escort Protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtSubstrate-binding subunit of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component composed of the alpha subunit RGTA and the beta subunit RGTB (Probable). Preferentially binds the GDP-bound form of Rab and stimulates geranylgeranylation of various Rab GTPases in vitro (PubMed:15854662). {ECO:0000269|PubMed:15854662, ECO:0000305|PubMed:15854662, ECO:0000305|PubMed:17140818}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004512265.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027193313.10.0rab escort protein 1
SwissprotQ8LLD40.0REP_ARATH; Rab escort protein 1
TrEMBLA0A3Q7XX760.0A0A3Q7XX76_CICAR; Rab proteins geranylgeranyltransferase component
STRINGXP_004512265.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35590.12e-73RWP-RK domain-containing protein
Publications ? help Back to Top
  1. Lange BM,Ghassemian M
    Genome organization in Arabidopsis thaliana: a survey for genes involved in isoprenoid and chlorophyll metabolism.
    Plant Mol. Biol., 2003. 51(6): p. 925-48
    [PMID:12777052]
  2. Hála M,Eliás M,Zárský V
    A specific feature of the angiosperm Rab escort protein (REP) and evolution of the REP/GDI superfamily.
    J. Mol. Biol., 2005. 348(5): p. 1299-313
    [PMID:15854662]
  3. Wojtas M, et al.
    Cloning and characterization of Rab Escort Protein (REP) from Arabidopsis thaliana.
    Cell Biol. Int., 2007. 31(3): p. 246-51
    [PMID:17140818]
  4. Shi W,Zeng Q,Kunkel BN,Running MP
    Arabidopsis Rab Geranylgeranyltransferases Demonstrate Redundancy and Broad Substrate Specificity in Vitro.
    J. Biol. Chem., 2016. 291(3): p. 1398-410
    [PMID:26589801]