PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004512265.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | Nin-like | ||||||||
Protein Properties | Length: 1093aa MW: 122880 Da PI: 5.2433 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 83.8 | 1.6e-26 | 966 | 1015 | 3 | 52 |
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++i+l+dl kyF++pi +A+k+L+v+lTvLKr+CR++GI+RWPhRkiksl XP_004512265.2 966 AKITLSDLVKYFDMPIVEASKNLNVGLTVLKRKCREFGIPRWPHRKIKSL 1015 78**********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF51905 | 1.42E-34 | 16 | 351 | IPR023753 | FAD/NAD(P)-binding domain |
Gene3D | G3DSA:3.50.50.60 | 2.7E-30 | 16 | 69 | IPR023753 | FAD/NAD(P)-binding domain |
Pfam | PF00996 | 4.2E-9 | 17 | 67 | IPR018203 | GDP dissociation inhibitor |
PRINTS | PR00891 | 8.4E-25 | 19 | 37 | IPR018203 | GDP dissociation inhibitor |
PRINTS | PR00891 | 8.4E-25 | 37 | 54 | IPR018203 | GDP dissociation inhibitor |
Gene3D | G3DSA:3.30.519.10 | 2.1E-28 | 118 | 171 | No hit | No description |
Pfam | PF00996 | 3.0E-28 | 118 | 442 | IPR018203 | GDP dissociation inhibitor |
PRINTS | PR00891 | 8.4E-25 | 140 | 156 | IPR018203 | GDP dissociation inhibitor |
Gene3D | G3DSA:1.10.405.10 | 1.1E-27 | 173 | 281 | No hit | No description |
PRINTS | PR00891 | 8.4E-25 | 190 | 205 | IPR018203 | GDP dissociation inhibitor |
Gene3D | G3DSA:3.50.50.60 | 2.7E-30 | 285 | 392 | IPR023753 | FAD/NAD(P)-binding domain |
PRINTS | PR00891 | 8.4E-25 | 292 | 313 | IPR018203 | GDP dissociation inhibitor |
SuperFamily | SSF54373 | 1.44E-15 | 378 | 492 | No hit | No description |
Gene3D | G3DSA:3.30.519.10 | 2.1E-28 | 393 | 459 | No hit | No description |
PROSITE profile | PS51519 | 19.964 | 950 | 1035 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 4.1E-22 | 967 | 1015 | IPR003035 | RWP-RK domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007264 | Biological Process | small GTPase mediated signal transduction | ||||
GO:0055114 | Biological Process | oxidation-reduction process | ||||
GO:2000541 | Biological Process | positive regulation of protein geranylgeranylation | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0005092 | Molecular Function | GDP-dissociation inhibitor activity | ||||
GO:0016491 | Molecular Function | oxidoreductase activity | ||||
GO:0017137 | Molecular Function | Rab GTPase binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1093 aa Download sequence Send to blast |
MTESEESIAY PPIDPVNFDL IIVGTGLSES IIAAATSAVG KTILHLDPNS FYGSHFASLS 60 LEDLTSYLNS PPKSITAATT TTSPNDSDYA ALNLIQKPLY SDAEFIYRDS TDESSFLREN 120 SRKFNLDLGG PRALFSADKT IDLLLKSGAA QYLEFKGIDA SLAYDANEGL MNVPDSRGAI 180 FRDKNLSLKE KNQLMKFFKL VQQHLSDNGD EKISEEDLES PFVSFLEKIQ LPPKIKSILL 240 YAIAMVDFDQ ENSEVCKDLL KTKDGIDRLA LYSSSVGRFP NAPGALLYPI YGEGELPQAF 300 CRRAAVKGCI YVLRMPVISL LMDKANGSYK GIRLASGQDL FSHQLILDPS FTIPSTPSLS 360 PKDISSERLE MLSQRDIKGM VARGICITRS SIKPDVSNCS VVYPPRSLYP DQVTSIRALQ 420 IGSNLAVCPA GTFVLYFSTL CNDADEGKKL LNASVNALLT LPVSGNTESI PILQSDCEDK 480 KPAVLWGAFY IQKLTTGKFE AISSTPTPDG NLNYNELLDA TEKLFGQMYP EEEFFPKVTS 540 PEDTSDDDEN GITLEKIKDT VVQSYRTDPV QVRSWPMVLM FRFPLKAECF LNNNFHLRRI 600 LLSMDTIMAL KVTSFGSNCS SKTFSDSSMF PHLAYISIME LPTTKASDSI PFCLQVPIIE 660 LQELSSFHTM STKALNASPI CLHSEYMWTN ALPTKPEIIE LQTKLSFSSI ESKIFLQELT 720 SPHLAYKSTI ALSTTTSTSA PNLYTSPWIC FTSCKKEQHL SKLTKNSFIH SCYLFKFFFM 780 DSSLTNLLLF NNTIQPELIR SVHVYRECDD DDDVVEEREV EREFVFSESG SYVEMQATPI 840 LNLMKSRLFQ EVFEGYMNGV WLCIFAFHAF NTPPFSHIPT LFLLTRNPKL QAIPNLLNDL 900 QMIYKLDPKE EHKDTPEKKV LPVLDQDLNC LPFEEDESEL PDDETDVESS SGSAGKKKRA 960 PSDHVAKITL SDLVKYFDMP IVEASKNLNV GLTVLKRKCR EFGIPRWPHR KIKSLDSLIH 1020 DLQEEAKHQE MEDKAAAMAV IRRQKMLENE KENIEKKPFM DIQSETKRFR QDVFKRRHRA 1080 RAIEKHNSTV AST |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ltx_R | 4e-37 | 114 | 543 | 215 | 610 | Rab Escort Protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Substrate-binding subunit of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component composed of the alpha subunit RGTA and the beta subunit RGTB (Probable). Preferentially binds the GDP-bound form of Rab and stimulates geranylgeranylation of various Rab GTPases in vitro (PubMed:15854662). {ECO:0000269|PubMed:15854662, ECO:0000305|PubMed:15854662, ECO:0000305|PubMed:17140818}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004512265.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027193313.1 | 0.0 | rab escort protein 1 | ||||
Swissprot | Q8LLD4 | 0.0 | REP_ARATH; Rab escort protein 1 | ||||
TrEMBL | A0A3Q7XX76 | 0.0 | A0A3Q7XX76_CICAR; Rab proteins geranylgeranyltransferase component | ||||
STRING | XP_004512265.1 | 0.0 | (Cicer arietinum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35590.1 | 2e-73 | RWP-RK domain-containing protein |
Publications ? help Back to Top | |||
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