PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004512106.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | C3H | ||||||||
Protein Properties | Length: 1245aa MW: 137633 Da PI: 6.1379 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 20.3 | 1e-06 | 1222 | 1245 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C+ f+++G+Ck G++C + H+ XP_004512106.1 1222 GQRICK-FYESGYCKKGASCAYLHP 1245 6899**.8899*************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57903 | 2.1E-8 | 65 | 126 | IPR011011 | Zinc finger, FYVE/PHD-type |
Gene3D | G3DSA:3.30.40.10 | 4.3E-9 | 74 | 134 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
CDD | cd15568 | 1.92E-19 | 81 | 126 | No hit | No description |
SMART | SM00249 | 1.8E-7 | 81 | 127 | IPR001965 | Zinc finger, PHD-type |
PROSITE pattern | PS01359 | 0 | 82 | 142 | IPR019786 | Zinc finger, PHD-type, conserved site |
SuperFamily | SSF47592 | 9.16E-22 | 283 | 361 | IPR003121 | SWIB/MDM2 domain |
SMART | SM00151 | 7.0E-4 | 283 | 365 | IPR019835 | SWIB domain |
Gene3D | G3DSA:1.10.245.10 | 1.5E-25 | 284 | 367 | IPR003121 | SWIB/MDM2 domain |
Pfam | PF02201 | 1.9E-14 | 287 | 360 | IPR003121 | SWIB/MDM2 domain |
PROSITE profile | PS51360 | 24.963 | 419 | 552 | IPR004343 | Plus-3 domain |
SMART | SM00719 | 1.2E-39 | 419 | 529 | IPR004343 | Plus-3 domain |
SuperFamily | SSF159042 | 9.42E-30 | 420 | 549 | IPR004343 | Plus-3 domain |
Pfam | PF03126 | 1.3E-23 | 424 | 527 | IPR004343 | Plus-3 domain |
SuperFamily | SSF55277 | 2.09E-17 | 715 | 769 | IPR003169 | GYF domain |
CDD | cd00072 | 5.98E-17 | 716 | 771 | No hit | No description |
PROSITE profile | PS50829 | 15.047 | 716 | 770 | IPR003169 | GYF domain |
SMART | SM00444 | 5.4E-19 | 717 | 772 | IPR003169 | GYF domain |
Gene3D | G3DSA:3.30.1490.40 | 7.8E-18 | 718 | 770 | IPR003169 | GYF domain |
Pfam | PF02213 | 9.6E-13 | 719 | 761 | IPR003169 | GYF domain |
PROSITE profile | PS50103 | 15.253 | 1220 | 1245 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.83E-6 | 1220 | 1244 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.2E-4 | 1222 | 1245 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.2E-4 | 1224 | 1244 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1245 aa Download sequence Send to blast |
MEQAKTETPA TAPAPESKLV PMKASSDVNM TERDGGCCTP KLDAPVTGAD GADSKKKRGR 60 PAKGIPKTAP PPKQKKDDED VCFICFDGGS LVLCDRRGCP KAYHPACVKR DEAFFRSKAK 120 WNCGWHICSS CQKAAHYWCY TCTYSLCKGC IQNADFVCVR GNKGLCGICK KTIMLIENSA 180 QGNKEMCEVD FDDKSSWEYL FKVYWIYLKE NLSLTFDELL QARNPSKGAA PMVQTSHQLN 240 HLKDNKGSGP ENSCIDIESN NGKDKKSTGT SGGETGVPLP ECTRWASKEL LEFVSHMKNG 300 DTSLMSQFDV QNLLLEYIKK NNLRDPQQKS QIVCDSRLVN LFGKARLGYI EMLMLLEPHF 360 LVKDNTRAEN TFGAGIVDAL ANEGEAIVKQ SILVNDKRST ISKKADVLVP LNNQDAYAAI 420 NAHNINLIYL RRNLMESLTD DTERIHEKVV GSFVRIRISS GDQKQDMYRL VQVVGITKVA 480 EPYKIGTRKT DIKLEILNLN RKEVISIDEI SNQEFFEDEC KRLRQSIKYG LSKRLTVGEI 540 LNKALTFQEI RVNDLLEAEI LRLNNLRDRA SEKGHRKELK ECVEKLQLLN SLEERQRRLH 600 EIPDVHSDPN LDSLYESDED AGESDDNKQD GKIPIFSRIW DGVLNGVGGR TRDLTTTSDP 660 NGNICLVKDH INPNETAIDD STNIVMKSEV SSVAVDISSS RLCTGIDQPF DDFMNDKSWH 720 YQDPSGKVQG PFSMLQLYKW NASGHFPPDL RIWRIDEKQG NSILLTDALN GKCSKNVSLQ 780 PNSPLLSLGA SVALGDNESN QDGERNSIRD AISADSQIIE QRSELKVDDT STQSNGKDES 840 VRSNEWHDQS HAYPSLQPTA FSEKSNENHT KKLSEDHGIE KISEDDGNHG SNRTSGGQSN 900 SGQNNQKQSD SEDNSGQSSG QNLRRPNLNI SSNCLVATSA HVSGTRTSPH KLGFDLHLPP 960 SPPACNTTTW QAIIGEPDDF DESVSDLLAE VEAMESLGGL ESPTSIMKRS EELADGSKNL 1020 CLSFADFSPM LDAGKGDALS STCDLQLPSQ STAAVEPLQQ ADVHHHHQRI SEELSSRNSK 1080 VDVGTKNICV SSNQWESGSE TSPIFPSAAT LGMTVDTTWR LGLESTHLGW SGMDQRNANT 1140 SWGVGQTAVN ENRSSNSCTS VVTPSFGDSQ TRYGSDRFSV PRDRGFPGHS REPGLVRGRT 1200 AWNRQPVFGV GNGGSYRPLP KGQRICKFYE SGYCKKGASC AYLHP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4gnd_A | 2e-13 | 72 | 148 | 10 | 81 | Histone-lysine N-methyltransferase NSD3 |
4gnd_C | 2e-13 | 72 | 148 | 10 | 81 | Histone-lysine N-methyltransferase NSD3 |
4gne_A | 2e-13 | 72 | 148 | 10 | 81 | Histone-lysine N-methyltransferase NSD3 |
4gnf_A | 2e-13 | 72 | 148 | 10 | 81 | Histone-lysine N-methyltransferase NSD3 |
4gng_A | 2e-13 | 72 | 148 | 10 | 81 | Histone-lysine N-methyltransferase NSD3 |
4gng_D | 2e-13 | 72 | 148 | 10 | 81 | Histone-lysine N-methyltransferase NSD3 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004512106.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CR954188 | 0.0 | CR954188.2 Medicago truncatula chromosome 5 clone mth2-193f16, COMPLETE SEQUENCE. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004512106.1 | 0.0 | zinc finger CCCH domain-containing protein 44-like | ||||
Swissprot | Q9SD34 | 0.0 | C3H44_ARATH; Zinc finger CCCH domain-containing protein 44 | ||||
TrEMBL | A0A1S2YYW4 | 0.0 | A0A1S2YYW4_CICAR; zinc finger CCCH domain-containing protein 44-like | ||||
STRING | XP_004512106.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1435 | 15 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G51120.1 | 0.0 | DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding |