PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004512093.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MIKC_MADS
Protein Properties Length: 235aa    MW: 27455.4 Da    PI: 9.3754
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004512093.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF94.16.6e-30959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    k ien +nrqvt+skRrngi+KKA+ELSvLCda+v++i+fs+++k++ey++
  XP_004512093.1  9 KLIENPTNRQVTYSKRRNGIFKKAHELSVLCDAKVSLIMFSKNNKMHEYIT 59
                    569**********************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.5E-41160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.469161IPR002100Transcription factor, MADS-box
CDDcd002651.37E-37277No hitNo description
SuperFamilySSF554551.12E-34296IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004045.0E-27323IPR002100Transcription factor, MADS-box
PfamPF003193.5E-251157IPR002100Transcription factor, MADS-box
PRINTSPR004045.0E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004045.0E-273859IPR002100Transcription factor, MADS-box
PfamPF014865.0E-1883171IPR002487Transcription factor, K-box
PROSITE profilePS5129714.31485178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MGRGKIEIKL IENPTNRQVT YSKRRNGIFK KAHELSVLCD AKVSLIMFSK NNKMHEYITP  60
GLSTKKIIDQ YQKTVGDIDL WRSHYEKMLE NLKKLKDINN KLRRQIRHRI GEGGLELDDL  120
SFQQLRSLED DMVSSIAKIR DRKFHVIKTR TDTCRKKVRS LEQMNGNLLL ELEKCVIHHP  180
SFIFHDEGEE ESLANGASTL YAFCHHHSHL NHHHIPHHHH GGEEEAFKTD DLRLA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A2e-15162162MEF2 CHIMERA
6byy_B2e-15162162MEF2 CHIMERA
6byy_C2e-15162162MEF2 CHIMERA
6byy_D2e-15162162MEF2 CHIMERA
6bz1_A3e-15162162MEF2 CHIMERA
6bz1_B3e-15162162MEF2 CHIMERA
6bz1_C3e-15162162MEF2 CHIMERA
6bz1_D3e-15162162MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004512093.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN4120970.0JN412097.1 Medicago truncatula MADS-box transcription factor TM6 (TM6) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004512093.11e-174floral homeotic protein DEFICIENS-like isoform X1
SwissprotQ003J21e-91TM6_VITVI; Agamous-like MADS-box protein TM6
TrEMBLA0A1S2YYV41e-173A0A1S2YYV4_CICAR; floral homeotic protein DEFICIENS-like isoform X1
STRINGXP_004512093.11e-174(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27353375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.12e-58MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]