PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004512080.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

SRS

Protein Properties

Length: 307aa MW: 33723.1 Da PI: 6.1665

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004512080.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	193.5	7.1e-60	103	244	3	153
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaesk 97 sg++sCqdCGnqakkdC h RCRtCCksrgfdC+thvkstWvpaa+rrerqqq++ ++++++++ +++ + +r s+ ++l+ ++ XP_004512080.1 103 SGGISCQDCGNQAKKDCPHVRCRTCCKSRGFDCQTHVKSTWVPAARRRERQQQQHHQHTHHNNKLETSLA-CTR-----LPSN--PSSLPLP-AP 188 7899********************************************99988764443332222211.111.....1222..2333333.34 PP DUF702 98 keletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 le ++P+ vss+a frcvrvss+d++eee+aY tav+igGhvf+GiLyd+G++ XP_004512080.1 189 GLLEEVNFPAMVSSQAEFRCVRVSSIDESEEEYAYSTAVNIGGHVFRGILYDYGPD 244 5677778*********************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.3E-60	105	244	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	3.3E-27	107	149	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	9.1E-25	196	243	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence Send to blast
MAGFFSLGRG NNNNNEGENQ QNNIPPPTPT TDTLFWYNNQ NKNDDVVSTY RGFEIWNQHQ 60 QQQQQQFLGG VEQQDLYSSA AALGVGPSRG SDERRSNELV ASSGGISCQD CGNQAKKDCP 120 HVRCRTCCKS RGFDCQTHVK STWVPAARRR ERQQQQHHQH THHNNKLETS LACTRLPSNP 180 SSLPLPAPGL LEEVNFPAMV SSQAEFRCVR VSSIDESEEE YAYSTAVNIG GHVFRGILYD 240 YGPDGSGNYM AAGNTSSSGV EAVVEPLNLI SGVPSSEIVD PCSLYPAPIN TFMPPSGTQF 300 FPHPRST

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Suppressor of the gibberellin (GA) signal transduction. {ECO:0000269\|PubMed:10368174, ECO:0000269\|PubMed:11706176, ECO:0000269\|PubMed:16740146}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004512080.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CR955005	1e-54	CR955005.2 Medicago truncatula chromosome 5 clone mte1-58c24, COMPLETE SEQUENCE.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004512080.1	0.0	protein SHI RELATED SEQUENCE 1-like
Swissprot	Q9XGX0	9e-79	SHI_ARATH; Protein SHORT INTERNODES
TrEMBL	A0A1S2YYT8	0.0	A0A1S2YYT8_CICAR; protein SHI RELATED SEQUENCE 1-like
STRING	XP_004512080.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF882	34	125

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66350.1	2e-61	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Islam MA, et al. Overexpression of the AtSHI gene in poinsettia, Euphorbia pulcherrima, results in compact plants. PLoS ONE, 2013. 8(1): p. e53377 [PMID:23308204] Pfannebecker KC,Lange M,Rupp O,Becker A An Evolutionary Framework for Carpel Developmental Control Genes. Mol. Biol. Evol., 2017. 34(2): p. 330-348 [PMID:28049761] Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]