PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004512050.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family ZF-HD
Protein Properties Length: 284aa    MW: 31790.6 Da    PI: 8.9201
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004512050.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer101.75.1e-3291148260
     ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 
                     +k+ Y+eClkNhAas+G+h+vDGCgEfmps geegt++++kCaAC+CHRnFHR++v+++
  XP_004512050.1  91 TKICYRECLKNHAASMGSHVVDGCGEFMPS-GEEGTPESFKCAACDCHRNFHRKHVQQQ 148
                     5789*************************9.999********************99875 PP
2Homeobox15.13.9e-05221281157
                     TT--SS--HHHHHHHHHHHH....HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
        Homeobox   1 rrkRttftkeqleeLeelFe....knrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                     +r Rt+f++eq + + e+ e    k ++ +++e ++  +++g++ ++ kvW +N ++ +kk
  XP_004512050.1 221 KRMRTKFSQEQKDKMMEFAEkvgwKIQKTDEQEVQQFCSQVGIKRQVFKVWMHNNKQAMKK 281
                     799************986667777789******************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047703.4E-2993145IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.20695144IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257741.0E-1995154IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015663.1E-2995144IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.601.1E-28214282IPR009057Homeodomain-like
SuperFamilySSF466892.11E-19214281IPR009057Homeodomain-like
PROSITE profilePS500718.875218282IPR001356Homeobox domain
TIGRFAMsTIGR015653.8E-28220277IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MEMKAENKET KTGTTSLGYN NLPNSNRNSS SSSSPPQNSH HNYNLYPPPH LASSQRPIIT  60
DPDPTVTTTA TNTSTTPITP QPQQTITTTT TKICYRECLK NHAASMGSHV VDGCGEFMPS  120
GEEGTPESFK CAACDCHRNF HRKHVQQQHV PNPNYHLNFP TPSSSNRFSH VLTTPTNSSG  180
QVQPLMMTFG GAAESSSEDL NMFQCNAGAQ FSLQAQPVSK KRMRTKFSQE QKDKMMEFAE  240
KVGWKIQKTD EQEVQQFCSQ VGIKRQVFKV WMHNNKQAMK KNQM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A7e-222212761873ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00268DAPTransfer from AT2G18350Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004512050.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU1376619e-74CU137661.2 Medicago truncatula chromosome 5 clone mth4-96g16, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004512050.10.0zinc-finger homeodomain protein 6-like
SwissprotQ9ZPW73e-67ZHD6_ARATH; Zinc-finger homeodomain protein 6
TrEMBLA0A1S2YYQ90.0A0A1S2YYQ9_CICAR; zinc-finger homeodomain protein 6-like
STRINGXP_004512050.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18350.13e-66homeobox protein 24