PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_004511936.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
|
||||||||
Family | Trihelix | ||||||||
Protein Properties | Length: 246aa MW: 28834.7 Da PI: 9.819 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 60.8 | 3.3e-19 | 25 | 116 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86 Wt+qe+ Li+a++e++ +l+rg l++ +Weev+ ++ ++s+ qC++k+e+l++r++ +k++ + ++ ss++++yf+ ++ XP_004511936.1 25 WTHQETINLITAYQEKWYSLKRGPLRGSQWEEVAVVVaarcgyDYNHPSKSALQCRHKMEKLRQRHRSEKHRLSATsSAASSRSWQYFRLMD 116 *************************************8666654455589***********************9995688999******998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 3.1E-17 | 24 | 118 | No hit | No description |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 246 aa Download sequence Send to blast |
MASSSSSPPK PIVLSLTKKP QPIPWTHQET INLITAYQEK WYSLKRGPLR GSQWEEVAVV 60 VAARCGYDYN HPSKSALQCR HKMEKLRQRH RSEKHRLSAT SSAASSRSWQ YFRLMDDLER 120 GPLPISVRPI PHNHNIEDEE LDDDINCDRG KRSFRSRSIN NILNQKPEVT TRRERDDDDD 180 ERVTAKGLTA ELRDFAERII GLENMKMEMM KETERFRLEM ENKRMRLILE SQWRIVDSIG 240 RAFRSS |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_004511936.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004511936.1 | 0.0 | uncharacterized protein LOC101494968 | ||||
TrEMBL | A0A1S2YYG8 | 0.0 | A0A1S2YYG8_CICAR; uncharacterized protein LOC101494968 | ||||
STRING | XP_004511936.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10087 | 28 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G24860.1 | 4e-31 | Trihelix family protein |