PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004511933.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family HSF
Protein Properties Length: 285aa    MW: 31727.5 Da    PI: 7.9589
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004511933.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.92.5e-36101002101
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+ye+++d +++++iswse+g+sfvv+++ +fa+++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF++++Fk+++kell  
  XP_004511933.1  10 FLTKTYEMVDDTATEDVISWSESGESFVVWKHADFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDK---------WEFANEHFKRDNKELLFL 95 
                     9****************************************************************999.........****************** PP

                     XXXXX CS
    HSF_DNA-bind  97 ikrkk 101
                     ikr+k
  XP_004511933.1  96 IKRRK 100
                     ***98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.1E-38393IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.3E-60699IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467859.52E-34799IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000564.2E-211033IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.1E-311099IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.2E-214860IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043404973IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.2E-216173IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009408Biological Processresponse to heat
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MSQRSVPAPF LTKTYEMVDD TATEDVISWS ESGESFVVWK HADFARDLLP KYFKHNNFSS  60
FVRQLNTYGF RKVVPDKWEF ANEHFKRDNK ELLFLIKRRK VVPQPSSHPP EAVKTGAEGN  120
SQSNSGSDGV GSTSTSTSSS NSKNPGSVET TIPQSANLSS ENEKLRKDNE TLSSELARAK  180
KQCDELVGFL KDRLNVGPDQ IDRILKDGSC EFVENAVGEE VEGGGGGRRD CLKLFGVWLK  240
EENLTDKNKR AREQQLGFGG PRLKVTKTVV DFSDVNVIKS AKICN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B6e-2459925129Heat shock factor protein 1
5d5v_B6e-2459925129Heat shock factor protein 1
5d5v_D6e-2459925129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004511933.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004511933.10.0heat stress transcription factor B-1
SwissprotP223353e-87HSF24_SOLPE; Heat shock factor protein HSF24
TrEMBLA0A1S2YYG20.0A0A1S2YYG2_CICAR; heat stress transcription factor B-1
STRINGXP_004511933.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71143247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.12e-76heat shock factor 4
Publications ? help Back to Top
  1. Scharf KD, et al.
    Three tomato genes code for heat stress transcription factors with a region of remarkable homology to the DNA-binding domain of the yeast HSF.
    EMBO J., 1990. 9(13): p. 4495-501
    [PMID:2148291]