PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004511904.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | AP2 | ||||||||
Protein Properties | Length: 521aa MW: 57411.4 Da PI: 7.6702 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.3 | 6.7e-17 | 158 | 207 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g XP_004511904.1 158 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 207 78*******************......55************************997 PP | |||||||
2 | AP2 | 43.7 | 6.6e-14 | 250 | 300 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+t+ eAa+a+++a+ k +g XP_004511904.1 250 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEIEAARAYDKAAIKCNG 300 89********.7******5553..2.26**********99**********99776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 9.81E-16 | 158 | 216 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 6.1E-9 | 158 | 207 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.596 | 159 | 215 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.9E-32 | 159 | 221 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.57E-11 | 159 | 216 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 5.8E-17 | 159 | 215 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.15E-17 | 250 | 310 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.4E-9 | 250 | 300 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.37E-25 | 250 | 310 | No hit | No description |
SMART | SM00380 | 3.1E-31 | 251 | 314 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.461 | 251 | 308 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.4E-16 | 251 | 308 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.0E-6 | 252 | 263 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.0E-6 | 290 | 310 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 521 aa Download sequence Send to blast |
MWDLNDSPDQ RKDYESEGCS SIKTSNDGDE VDDHHHKGKR VGSVSNSSSS AIVIEDGSEE 60 EEGENGTLKK RTSKVFGFSM DSSSSECPPV TRQFFPVEDS DMVVTSSVCG GGGGSSSFPR 120 AHWVGVKFCQ SESVGGGKSV EGSQPIKKSR RGPRSRSSQY RGVTFYRRTG RWESHIWDCG 180 KQVYLGGFDT AHAAARAYDR AAIKFRGVEA DINFNIEDYE EDLKQMSNLT KEEFVHVLRR 240 QSTGFPRGSS KYRGVTLHKC GRWEARMGQF LGKKYVYLGL FDTEIEAARA YDKAAIKCNG 300 KEAVTNFDPS IYDNELNTES PSNAADHNLD LSLGNSSSKC SNSLQAFGNY NTNAITTDQH 360 MAPESNWRNG GIKPKAVNIL PKPCNVRDGY GESEALRMLS QTHLQSPTAA TNTEMHRYGT 420 LYRSPVEQHH QMLHTFPHLH PSNFHVSSSS SSNGGRIGSD LSLSSMSDQQ KWQTGPPPHL 480 LATAAAASSG FPPQIIRPSS QPWLHKNSTT TIGFHTLMRP S |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional activator that promotes early floral meristem identity (PubMed:7919989). Is required subsequently for the transition of an inflorescence meristem into a floral meristem (PubMed:1675158). Plays a central role in the specification of floral identity, particularly for the normal development of sepals and petals in the wild-type flower, by spatially controlling the expression domains of multiple floral organ identity genes (PubMed:1675158, PubMed:23034631). Acts as A class cadastral protein by repressing the C class floral homeotic gene AGAMOUS in association with other repressors like LEUNIG and SEUSS (PubMed:1675158). Directly represses AGAMOUS by recruiting the transcriptional corepressor TOPLESS and the histone deacetylase HDA19 (PubMed:23034631). It is also required during seed development (PubMed:1675158). {ECO:0000269|PubMed:1675158, ECO:0000269|PubMed:23034631, ECO:0000269|PubMed:7919989}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004511904.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by the C class floral homeotic protein AGAMOUS in stamens and carpels. MicroRNA 172 (miRNA172) negatively regulates APETALA2 at the translational level and may modulate its expression pattern. Seems not to be influenced by jasmonate and Alternaria brassicicola. {ECO:0000269|PubMed:12805630, ECO:0000269|PubMed:12893888, ECO:0000269|PubMed:14555699}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT163121 | 0.0 | KT163121.1 Thermopsis turcica APETALA2-like protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004511904.1 | 0.0 | floral homeotic protein APETALA 2-like isoform X4 | ||||
Refseq | XP_027193360.1 | 0.0 | floral homeotic protein APETALA 2-like isoform X3 | ||||
Swissprot | P47927 | 1e-137 | AP2_ARATH; Floral homeotic protein APETALA 2 | ||||
TrEMBL | A0A1S2YYE4 | 0.0 | A0A1S2YYE4_CICAR; floral homeotic protein APETALA 2-like isoform X3 | ||||
STRING | XP_004511901.1 | 0.0 | (Cicer arietinum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36920.2 | 1e-118 | AP2 family protein |