PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004511795.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | bHLH | ||||||||
Protein Properties | Length: 303aa MW: 34487.2 Da PI: 7.9619 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.4 | 9.1e-12 | 133 | 180 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + h ++Er+RR+++ +f L l+P + kK++Ka++L A++Y+k+L+ XP_004511795.1 133 QEHVMAERKRREKLTRSFIALSALVPGL-----KKMDKASVLGDAIKYVKQLK 180 6799************************.....9*****************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.758 | 130 | 179 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.7E-9 | 133 | 179 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.66E-16 | 133 | 190 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.2E-16 | 134 | 191 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.45E-12 | 135 | 184 | No hit | No description |
SMART | SM00353 | 1.4E-14 | 136 | 185 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 303 aa Download sequence Send to blast |
MEDLTFFHQY PIDSLAYPFD NFHSLYESDS SNDNNYFNYD KTTPNCFPLE NLDLPRPTKK 60 IKTSNSCSYS SPQLISFEPL NAPQQFYNLD YSDLKPKIEK ITGLVSQGSY EEKILSNYDN 120 RANQTMRNST QAQEHVMAER KRREKLTRSF IALSALVPGL KKMDKASVLG DAIKYVKQLK 180 ERLQSLEEQG TKKKAIIVKR SFILPDDNND IESSKSNQTL PEIEVRVSAK DVLIKIQCDK 240 ENGLASTLLG HLQNHNLTLQ TTTFLPFGNN ILDITILAQM NKENCVTAKD LIGSLRKALL 300 VHN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 138 | 143 | ERKRRE |
2 | 139 | 144 | RKRREK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004511795.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CR932963 | 1e-48 | CR932963.2 Medicago truncatula chromosome 5 clone mth2-115p22, COMPLETE SEQUENCE. | |||
GenBank | CR955004 | 1e-48 | CR955004.2 Medicago truncatula chromosome 5 clone mte1-9e19, COMPLETE SEQUENCE. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004511795.1 | 0.0 | transcription factor bHLH18-like | ||||
Swissprot | Q9T072 | 1e-47 | BH025_ARATH; Transcription factor bHLH25 | ||||
TrEMBL | A0A1S2YY59 | 0.0 | A0A1S2YY59_CICAR; transcription factor bHLH18-like | ||||
STRING | XP_004511795.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF455 | 34 | 164 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37850.1 | 1e-46 | bHLH family protein |