PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004511794.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family bHLH
Protein Properties Length: 352aa    MW: 40103.7 Da    PI: 7.047
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004511794.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.12.4e-11166212455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h  +Er+RR+++ + f  L  l+P +     kK++Ka++L  Av+++k+Lq
  XP_004511794.1 166 DHVLAERKRREKLSQQFIALSALIPGL-----KKMDKASVLSDAVNHVKQLQ 212
                     6889***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.881162211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-16165226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.7E-16166226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.7E-9166212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.98E-11167216No hitNo description
SMARTSM003534.2E-14168217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MTSTYESWTS WLCDLEPEDY NFVNESNTNK VHESFHFHHE IDIITPLPQD HNSDSHYSST  60
MSNSSGDANS FERPSKTLKT NPSNTGYPSS QKKDSSFPYI LSFNNENPEP EPILNIDSSS  120
TLKPKAKSLN HGKSLTSNKG SLENQKKETK RKKNDSFTRS SQHNQDHVLA ERKRREKLSQ  180
QFIALSALIP GLKKMDKASV LSDAVNHVKQ LQEQVKVLEE KNTRFKNVES VVYVEKNKNK  240
KSYSHEDVSD TSSNSGYGNC YHESETMPEV EARVSEKNVL IRIHCEKKKE VLVKIMKEIE  300
NLHLSVTSSS TLQFGNTNLD ITVIAQMDEE FSLSVQELAR NLRVGLLKFM EL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1170175ERKRRE
2171176RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004511794.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004511794.10.0transcription factor bHLH18-like
RefseqXP_027193123.10.0transcription factor bHLH18-like
TrEMBLA0A1S2YY440.0A0A1S2YY44_CICAR; transcription factor bHLH18-like
STRINGXP_004511794.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.19e-55bHLH family protein