PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004511793.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family bHLH
Protein Properties Length: 327aa    MW: 36754.9 Da    PI: 6.9517
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004511793.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.15.8e-12153200355
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     + h ++Er+RR+++ +++  L  l+P +     kK++Ka++L  A++Y+k+Lq
  XP_004511793.1 153 QEHIIAERKRREKLSQSLIALAALIPGL-----KKMDKASVLGDAIKYVKELQ 200
                     5799************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.32150199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-9153200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-15154211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.2E-16154212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.05E-11155204No hitNo description
SMARTSM003533.0E-13156205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MEKLNTSSNE LATSWLSNLL MEEIDDCNLF QQCQPNLFDD EDFISHDIAS VLHQEENLQQ  60
QQQPLSSESY SSYNLERPNK KLKTKNTLQD LSPVSSPSST TSQIMSFEKS KSFSSINEVV  120
MFQTQKGSLQ KNNFVETMNS QGQGTKRSMA NNQEHIIAER KRREKLSQSL IALAALIPGL  180
KKMDKASVLG DAIKYVKELQ ERLKVLEEKK KDSPIESVVT VNKPPLSCES SSEEVASGNN  240
EHLPHVEVRV SDKDVLIRIH CHKQMGLLLK ILVEIQNLHL FVVNSSVLPF GDSILDITIV  300
AQKGTGYKLS RNDLVKNIRV AALRSMS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1158163ERKRRE
2159164RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004511793.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1390344e-70BT139034.1 Medicago truncatula clone JCVI-FLMt-7C6 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004511793.10.0transcription factor bHLH18-like
TrEMBLA0A1S2YY570.0A0A1S2YY57_CICAR; transcription factor bHLH18-like
STRINGXP_004511793.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110691238
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.18e-51bHLH family protein