PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004511779.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

NAC

Protein Properties

Length: 336aa MW: 37738 Da PI: 4.8959

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004511779.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	165.4	1.9e-51	6	140	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppGfrFhPtdeel+ +yLk+kveg ++el evi+ +d yk++Pw+Lp k + +++ ew+fF++rd+ky++g+r+nratk+gyWkatgkd++v+ XP_004511779.1 6 LPPGFRFHPTDEELIGYYLKRKVEGLEIEL-EVIPVIDFYKFDPWELPeKsFLPKRDMEWFFFCPRDRKYPNGSRTNRATKAGYWKATGKDRKVV 99 79**************************.99**********95344555788*********************************** PP NAM 94 sk......kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ ++++g +ktLvfy grap g +t+Wvmheyrl XP_004511779.1 100 CEsspfisIETVTGYRKTLVFYCGRAPLGDRTNWVMHEYRL 140 76666655556**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.41E-58	4	160	IPR003441	NAC domain
PROSITE profile	PS51005	57.172	6	160	IPR003441	NAC domain
Pfam	PF02365	2.3E-29	7	140	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0008283	Biological Process	cell proliferation
GO:0071365	Biological Process	cellular response to auxin stimulus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence Send to blast
MGGASLPPGF RFHPTDEELI GYYLKRKVEG LEIELEVIPV IDFYKFDPWE LPEKSFLPKR 60 DMEWFFFCPR DRKYPNGSRT NRATKAGYWK ATGKDRKVVC ESSPFISIET VTGYRKTLVF 120 YCGRAPLGDR TNWVMHEYRL CDDPSQGSEG AYALCRVIKK NEKSNDSQGQ GRKKAKANDG 180 SNSISTNGNE VSSQASQLCS GSESLYSSPI DFSGNVPLMA GFEQASSDTN PSSFWLSPDM 240 ILDSSKQDYS QVQVQDVVGS FPQQHDLLSA MTPWQSFENT EISPSSSYSN FNAEIEFSDA 300 LSRIGCISPY SGQGSFMDLP YECYDQIHSF GDPKKF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-50	5	161	16	166	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-50	5	161	16	166	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-50	5	161	16	166	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-50	5	161	16	166	NO APICAL MERISTEM PROTEIN
4dul_A	1e-50	5	161	16	166	NAC domain-containing protein 19
4dul_B	1e-50	5	161	16	166	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in tissue reunion of wounded inflorescence stems. Required for the division of pith cells in the reunion process, which is dependent on polar-transported auxin and the wound-inducible hormones ethylene and jasmonate (PubMed:21911380). Binds to the promoters of XTH19 and XTH20 to induce their expression via auxin signaling. XTH19 and XTH20 are involved in cell proliferation in the tissue reunion process of incised stems (PubMed:25182467). Involved in hypocotyl graft union formation. Required for the auxin- mediated promotion of vascular tissue proliferation during hypocotyl graft attachment (PubMed:27986917). {ECO:0000269\|PubMed:21911380, ECO:0000269\|PubMed:25182467, ECO:0000269\|PubMed:27986917}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00439	DAP	Transfer from AT4G17980	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004511779.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by wounding in the flowering stem. {ECO:0000269\|PubMed:21911380}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CR931738	1e-109	CR931738.1 Medicago truncatula chromosome 5 clone mth2-56k10, COMPLETE SEQUENCE.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004511779.1	0.0	NAC domain-containing protein 71 isoform X1
Swissprot	O49697	5e-99	NAC71_ARATH; NAC domain-containing protein 71
TrEMBL	A0A1S2YY32	0.0	A0A1S2YY32_CICAR; NAC domain-containing protein 71 isoform X1
STRING	XP_004511780.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6722	34	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17980.1	9e-97	NAC domain containing protein 71

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Asahina M,Satoh S Molecular and physiological mechanisms regulating tissue reunion in incised plant tissues. J. Plant Res., 2015. 128(3): p. 381-8 [PMID:25736731] Matsuoka K, et al. Differential Cellular Control by Cotyledon-Derived Phytohormones Involved in Graft Reunion of Arabidopsis Hypocotyls. Plant Cell Physiol., 2016. 57(12): p. 2620-2631 [PMID:27986917]