PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004511597.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family HSF
Protein Properties Length: 337aa    MW: 37196.4 Da    PI: 5.1595
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004511597.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind117.29.9e-37251162102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+y++++d++ ++lisw+e+g+sf+v+++ efa+++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF+++ F++g+k+ll++
  XP_004511597.1  25 FLTKTYQLVDDPSADDLISWNEDGTSFIVWKPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFANDGFRRGEKNLLRD 110
                     9*****************************************************************99.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     i+r+k 
  XP_004511597.1 111 IQRRKI 116
                     ***985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.1E-3815108IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.9E-6021114IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467856.8E-3622114IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000564.6E-212548IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.0E-3225114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.6E-216375IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406488IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.6E-217688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MAPLPVEQTG ESATTDSQRS IPTPFLTKTY QLVDDPSADD LISWNEDGTS FIVWKPAEFA  60
RDLLPKYFKH NNFSSFVRQL NTYGFRKVVP DRWEFANDGF RRGEKNLLRD IQRRKISPTA  120
GTSMATAVAV ANTVTVAVAA PVTPTTSGDE QVVSSNSSPI MAHNSTTVHL STSCTTAPEL  180
LEENERLRKE NMQLSNELSQ LKGLCNNILS MMTNYASGFS RQLESSTSAA TARGVIVTEG  240
KALDLLPARN VLSVGGGGAT TANLAETEVP KLFGVSIGLK RFRTESEAEP EREEREHNKM  300
PTKAQSSQER DRESDVKSEP LDGDDSDDQE HRWHLMK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-262511720123Heat shock factor protein 1
5d5u_B3e-262511429129Heat shock factor protein 1
5d5v_B3e-262511429129Heat shock factor protein 1
5d5v_D3e-262511429129Heat shock factor protein 1
5hdg_A2e-262511410110Heat shock factor protein 1
5hdn_A2e-262511410110Heat shock factor protein 1
5hdn_B2e-262511410110Heat shock factor protein 1
5hdn_C2e-262511410110Heat shock factor protein 1
5hdn_D2e-262511410110Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00432DAPTransfer from AT4G11660Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004511597.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004511597.10.0heat stress transcription factor B-2b
SwissprotQ9T0D32e-95HFB2B_ARATH; Heat stress transcription factor B-2b
TrEMBLA0A1S2YXN90.0A0A1S2YXN9_CICAR; heat stress transcription factor B-2b
STRINGXP_004511596.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20373482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.11e-82HSF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]