PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004511594.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB
Protein Properties Length: 471aa    MW: 53174.9 Da    PI: 8.7894
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004511594.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.71.3e-1354101146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqk 46 
                      +g WT+eEd ll++ vk++Gg + k I  +     g t++qc +rwqk
   XP_004511594.1  54 KGCWTEEEDNLLIETVKKHGGSNRKNIGGYAEylHGQTDNQCLHRWQK 101
                      799************************99999999************9 PP
2Myb_DNA-binding56.37.4e-18110155248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       +WT+eEde l+++v+++G ++W+ Ia+ m+  R +kqc++rw+++l
   XP_004511594.1 110 RSWTKEEDESLIELVRKYGFKRWSFIAKFMP-DRVGKQCRERWHNHL 155
                      68*****************************.*************97 PP
3Myb_DNA-binding506.7e-16161203145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      +++WT+eE+ +l+  ++ +G++ W+ Iar ++ gR+++ +k++w+
   XP_004511594.1 161 KDAWTEEEESKLALFHQIYGSR-WSEIARFLP-GRSDNAIKNHWN 203
                      679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.549103IPR017930Myb domain
SuperFamilySSF466896.28E-1050107IPR009057Homeodomain-like
SMARTSM007171.4E-753105IPR001005SANT/Myb domain
PfamPF002493.1E-1054101IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.9E-1456113IPR009057Homeodomain-like
CDDcd001671.63E-857102No hitNo description
PROSITE profilePS5129430.422104159IPR017930Myb domain
SuperFamilySSF466895.75E-32106202IPR009057Homeodomain-like
SMARTSM007177.6E-17108157IPR001005SANT/Myb domain
CDDcd001672.10E-16111155No hitNo description
PfamPF139212.9E-19112172No hitNo description
Gene3DG3DSA:1.10.10.605.2E-27114161IPR009057Homeodomain-like
SMARTSM007173.1E-15160208IPR001005SANT/Myb domain
PROSITE profilePS5129417.075160210IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.7E-20162209IPR009057Homeodomain-like
CDDcd001671.87E-11163203No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MFEVKNKLND IEFDSPHRDL LHLCLSSPNC NSNTCLLEAT SVTGRIKAQV SSTKGCWTEE  60
EDNLLIETVK KHGGSNRKNI GGYAEYLHGQ TDNQCLHRWQ KVSNPDLVKR SWTKEEDESL  120
IELVRKYGFK RWSFIAKFMP DRVGKQCRER WHNHLDPAIK KDAWTEEEES KLALFHQIYG  180
SRWSEIARFL PGRSDNAIKN HWNCSMKKKS STSPIRCDDN VSTTSYCSSV IKPAHDLFKA  240
VDQSSPKQSH WLKHNADNFP TKMIIQSSSV EELCSEKNSF GLATPTRASG QGERRLVNLP  300
NETETVKHMN SLDNSLDMPA TNMDCFSLAT QVKSPKRQKV SFSDSKFIAS NESDSFHLSY  360
SKLASHEKKG QVGRENSNKI ISGPDRADVT SSEYDDYFGV PPSSVPKVSP EYVLRSLAMT  420
YKNIPSIIRK RTSKKAFSAA NCGKSLTPSR IVDSTHEVGC VIGLDNLKLN Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C4e-57542099158MYB PROTO-ONCOGENE PROTEIN
1h89_C4e-57542099158MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004511594.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004511594.10.0transcription factor MYB3R-3-like isoform X1
RefseqXP_027193158.10.0transcription factor MYB3R-3-like isoform X1
TrEMBLA0A1S2YXP20.0A0A1S2YXP2_CICAR; transcription factor MYB3R-3-like isoform X1
STRINGXP_004511594.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF133012528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11510.23e-65myb domain protein 3r-4