PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004511250.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | HB-other | ||||||||
Protein Properties | Length: 377aa MW: 42018.4 Da PI: 7.8871 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 18.8 | 2.8e-06 | 14 | 74 | 7 | 55 |
--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHH CS Homeobox 7 ftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRake 55 ft+ +++e+e ++ n p +e + LA+k ++ +qV +WFqN+R+ XP_004511250.1 14 FTQPEVTEMEVILNEhnNAMPAREVLAALADKFsesperkgkiTVQMKQVWNWFQNKRYAI 74 7788888888887754588999999999999999999999999999************865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.56E-9 | 4 | 76 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 0.0077 | 7 | 81 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 9.151 | 13 | 77 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 9.1E-7 | 13 | 81 | IPR009057 | Homeodomain-like |
Pfam | PF16719 | 1.2E-40 | 129 | 255 | IPR032001 | SAWADEE domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003682 | Molecular Function | chromatin binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 377 aa Download sequence Send to blast |
MGRPPSNGGP AFRFTQPEVT EMEVILNEHN NAMPAREVLA ALADKFSESP ERKGKITVQM 60 KQVWNWFQNK RYAIRAKSSK TPGKLNITPM PRDNMAPARN MPQLTASPIX APSVSVQTTA 120 KGTPENSVME FEAKSGRDGA WYDVANFLSY RHLESSDPEV LVRFAGFGSE EDEWINVRKN 180 VRPRSLPCES SECVAVLPGD LILCFQEGKE QALYFDAHVL DAQRRRHDVR GCRCRFLVRY 240 DHDQSEEIVP LRKVCRRPET DYRLHQLHAV HDSAAPADQK SGMDPANIHG IKVTNSSETV 300 QKQQQIANIH IVTPVLQTNV SIPPLPPPPP PQSMNVDPKK VETKLDVQAG NSVTPVSVPF 360 TTSNVPEVST QNLAEGK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4iuq_A | 3e-46 | 129 | 259 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuq_B | 3e-46 | 129 | 259 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iur_A | 3e-46 | 129 | 259 | 4 | 134 | SHH1 SAWADEE |
4iur_B | 3e-46 | 129 | 259 | 4 | 134 | SHH1 SAWADEE |
4iut_A | 3e-46 | 129 | 259 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iut_B | 3e-46 | 129 | 259 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuu_A | 3e-46 | 129 | 259 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuu_B | 3e-46 | 129 | 259 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuv_A | 3e-46 | 129 | 259 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuv_B | 3e-46 | 129 | 259 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004511250.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004511250.1 | 0.0 | protein SAWADEE HOMEODOMAIN HOMOLOG 2 | ||||
Swissprot | Q8RWJ7 | 1e-142 | SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2 | ||||
TrEMBL | A0A1S2YWW8 | 0.0 | A0A1S2YWW8_CICAR; protein SAWADEE HOMEODOMAIN HOMOLOG 2 | ||||
STRING | XP_004511250.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6816 | 31 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18380.1 | 1e-132 | sequence-specific DNA binding transcription factors;sequence-specific DNA binding |