PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004511166.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

Dof

Protein Properties

Length: 452aa MW: 50196.3 Da PI: 7.3171

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004511166.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	119.3	1.4e-37	118	177	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k l+cprC+s++tkfCy+nny+++qPr+fCk+C+ryWt+GG++rnvPvG+g+r+ k+s XP_004511166.1 118 PDKVLPCPRCNSSETKFCYFNNYNVNQPRHFCKNCQRYWTAGGTIRNVPVGAGKRRGKHS 177 78999***************************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-28	115	175	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.9E-31	119	176	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.416	122	176	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	124	160	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 452 aa Download sequence Send to blast
MFQVKQDPSI KLFGSDIQIH IPTTTDSQYS LSQIHSLPQQ QPFIIMNGLE ESINADVGVP 60 LNEVSSKQEN PQEDATNPIP TMNKTGTSKL AGKAVHRTNE HKTPKGDIDN QEKVFKKPDK 120 VLPCPRCNSS ETKFCYFNNY NVNQPRHFCK NCQRYWTAGG TIRNVPVGAG KRRGKHSPLQ 180 HCQVSVTPDA VPVVIHTDLN PATDKHISSS IVPSVNIPSL GEEVPLCESL ETVLNLKSHR 240 KIEMDSSTVK EDIDEDPSVI AAEFGEKEYS ENGIEHVGLI QQCNGLLPLH SLHYYTAPSW 300 TCQWNPCWNA MSTSSYWGCM PNWAGRQIEE YSFNGIPSPS SSASSGTFSG NRSPTLGKHC 360 RDGSTLTEDD TMKKNIWVPK TIRINDPEEA AKSSIWSTLT TKSQQNKPVM KGSVFKSFEP 420 KSNAKSRNLD DNQILRANPA AFCRSGSFQE SM

Sequence ? help Back to Top

Protein Sequence Length: 452 aa Download sequence Send to blast

MFQVKQDPSI KLFGSDIQIH IPTTTDSQYS LSQIHSLPQQ QPFIIMNGLE ESINADVGVP  60
LNEVSSKQEN PQEDATNPIP TMNKTGTSKL AGKAVHRTNE HKTPKGDIDN QEKVFKKPDK  120
VLPCPRCNSS ETKFCYFNNY NVNQPRHFCK NCQRYWTAGG TIRNVPVGAG KRRGKHSPLQ  180
HCQVSVTPDA VPVVIHTDLN PATDKHISSS IVPSVNIPSL GEEVPLCESL ETVLNLKSHR  240
KIEMDSSTVK EDIDEDPSVI AAEFGEKEYS ENGIEHVGLI QQCNGLLPLH SLHYYTAPSW  300
TCQWNPCWNA MSTSSYWGCM PNWAGRQIEE YSFNGIPSPS SSASSGTFSG NRSPTLGKHC  360
RDGSTLTEDD TMKKNIWVPK TIRINDPEEA AKSSIWSTLT TKSQQNKPVM KGSVFKSFEP  420
KSNAKSRNLD DNQILRANPA AFCRSGSFQE SM

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004511166.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004511166.1	0.0	cyclic dof factor 1-like isoform X1
TrEMBL	A0A1S2YWS1	0.0	A0A1S2YWS1_CICAR; cyclic dof factor 1-like isoform X1
STRING	XP_004511166.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3502	31	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	2e-59	cycling DOF factor 2