PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004511136.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family ARF
Protein Properties Length: 444aa    MW: 50818.2 Da    PI: 6.0769
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004511136.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B364.41.7e-20125225198
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f k+lt+  ++k+g +++p ++ae++       +++++ ++l+ +d +g +W++++i+  ++++++lt+GW+ Fv++++L  gD+++F   ++++
  XP_004511136.1 125 FSKILTSMETSKHGAFSIPMQHAEKCfhpldmTLQPPT-QDLVAKDMHGIEWNFRHIFHSHPREHLLTSGWNMFVNSKKLLPGDSCIFV--SEEN 216
                     78999999***********************9666655.49************************************************..5588 PP

                     E..EEEEE- CS
              B3  90 felvvkvfr 98 
                     +e  ++++r
  XP_004511136.1 217 GEIGIGIRR 225
                     888888887 PP
2Auxin_resp79.48.3e-27253333183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aaha++t+++F v Y+P++s+ eF+v+++ + +++++ +s+G+R+ m f+ e s++r   Gt+vg +d+dp+ Wp+S+Wr++k
  XP_004511136.1 253 AAHAVTTNTMFLVKYHPWTSPFEFMVPLNTYIESTQKDYSIGTRVHMIFDAEGSARRY--GTIVGNEDIDPIVWPGSEWRCIK 333
                     79**************************************************999886..*********************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.4E-30119237IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.03E-24120225IPR015300DNA-binding pseudobarrel domain
CDDcd100171.13E-17124225No hitNo description
SMARTSM010193.0E-14125227IPR003340B3 DNA binding domain
PfamPF023627.8E-19125225IPR003340B3 DNA binding domain
PROSITE profilePS5086312.407125227IPR003340B3 DNA binding domain
PfamPF065071.5E-24253333IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MNGASDGVYG STSGLKDNLF IELWHACAGS IYIPKLWDKV FYFPQGHLEQ IAILTRDQQD  60
GHYKETPLQI MPSKILCIVI GVQLKVEDNT DEVFALITLF PLGEPQELVL EDNQAIQNPS  120
ELYSFSKILT SMETSKHGAF SIPMQHAEKC FHPLDMTLQP PTQDLVAKDM HGIEWNFRHI  180
FHSHPREHLL TSGWNMFVNS KKLLPGDSCI FVSEENGEIG IGIRRGMNQQ SNISTTLSQL  240
STQTMPFQSL LTAAHAVTTN TMFLVKYHPW TSPFEFMVPL NTYIESTQKD YSIGTRVHMI  300
FDAEGSARRY GTIVGNEDID PIVWPGSEWR CIKVQWDSML NPCTYPERVC PWWIEPLGSS  360
NLKGYPNLPL QNKEHVQNPL GLNGFANDDM AGSSFKREYH KVDMDLQGYR YKTGNDEKSK  420
IFIFAFFIFL CLFIFFIFIF RPRM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A1e-10233592357Auxin response factor 1
4ldy_B1e-10233592357Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Promotes flowering, stamen development, floral organ abscission and fruit dehiscence. Functions independently of ethylene and cytokinin response pathways. May act as a repressor of cell division and organ growth. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:15960614, ECO:0000269|PubMed:16176952, ECO:0000269|PubMed:16339187}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004511136.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004511136.10.0auxin response factor 2 isoform X1
SwissprotQ94JM31e-108ARFB_ARATH; Auxin response factor 2
TrEMBLA0A1S2YWQ00.0A0A1S2YWQ0_CICAR; Auxin response factor
STRINGXP_004511136.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF131052329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.37e-98auxin response factor 2
Publications ? help Back to Top
  1. Chao WS,Doğramaci M,Foley ME,Horvath DP,Anderson JV
    Selection and validation of endogenous reference genes for qRT-PCR analysis in leafy spurge (Euphorbia esula).
    PLoS ONE, 2012. 7(8): p. e42839
    [PMID:22916167]
  2. Ozerova LV,Krasnikova MS,Troitsky AV,Solovyev AG,Morozov SY
    TAS3 Genes for small ta-siARF RNAs in plants belonging to subtribe Senecioninae: occurrence of prematurely terminated RNA precursors.
    Mol. Gen. Mikrobiol. Virusol., 2013.
    [PMID:24003511]
  3. Li C, et al.
    Ectopic expression of a maize hybrid down-regulated gene ZmARF25 decreases organ size by affecting cellular proliferation in Arabidopsis.
    PLoS ONE, 2014. 9(4): p. e94830
    [PMID:24756087]
  4. Lyons R, et al.
    Fusarium oxysporum triggers tissue-specific transcriptional reprogramming in Arabidopsis thaliana.
    PLoS ONE, 2015. 10(4): p. e0121902
    [PMID:25849296]
  5. Roodbarkelari F,Du F,Truernit E,Laux T
    ZLL/AGO10 maintains shoot meristem stem cells during Arabidopsis embryogenesis by down-regulating ARF2-mediated auxin response.
    BMC Biol., 2015. 13: p. 74
    [PMID:26358077]
  6. Meng LS,Wang ZB,Yao SQ,Liu A
    The ARF2-ANT-COR15A gene cascade regulates ABA-signaling-mediated resistance of large seeds to drought in Arabidopsis.
    J. Cell. Sci., 2015. 128(21): p. 3922-32
    [PMID:26395398]
  7. Zhao S,Zhang ML,Ma TL,Wang Y
    Phosphorylation of ARF2 Relieves Its Repression of Transcription of the K+ Transporter Gene HAK5 in Response to Low Potassium Stress.
    Plant Cell, 2016. 28(12): p. 3005-3019
    [PMID:27895227]
  8. Promchuea S,Zhu Y,Chen Z,Zhang J,Gong Z
    ARF2 coordinates with PLETHORAs and PINs to orchestrate ABA-mediated root meristem activity in Arabidopsis .
    J Integr Plant Biol, 2017. 59(1): p. 30-43
    [PMID:28074634]
  9. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  10. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]
  11. Zhang M,Hu X,Zhu M,Xu M,Wang L
    Transcription factors NF-YA2 and NF-YA10 regulate leaf growth via auxin signaling in Arabidopsis.
    Sci Rep, 2017. 7(1): p. 1395
    [PMID:28469131]
  12. Guan C, et al.
    Spatial Auxin Signaling Controls Leaf Flattening in Arabidopsis.
    Curr. Biol., 2017. 27(19): p. 2940-2950.e4
    [PMID:28943086]
  13. Liu Z, et al.
    ARF2-ARF4 and ARF5 are Essential for Female and Male Gametophyte Development in Arabidopsis.
    Plant Cell Physiol., 2018. 59(1): p. 179-189
    [PMID:29145642]
  14. Sarkar Das S, et al.
    Expression dynamics of miRNAs and their targets in seed germination conditions reveals miRNA-ta-siRNA crosstalk as regulator of seed germination.
    Sci Rep, 2018. 8(1): p. 1233
    [PMID:29352229]