PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004511035.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family SRS
Protein Properties Length: 322aa    MW: 34657.6 Da    PI: 8.0986
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004511035.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702182.91.3e-561142807153
          DUF702   7 sCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa..aeaaskrkrelkskkqsalsstklssaeskke 99 
                      CqdCGn+akkdC+++RCRtCCk rgfdC+thvkstW+pa+ rr+r    a    ++       ++ skr+r l s+++++ +++ +s++++++ 
  XP_004511035.1 114 VCQDCGNRAKKDCSFKRCRTCCKGRGFDCSTHVKSTWIPASLRRDRNMVVADGGGDSDGGVggGSNGSKRQRILVSSSHNNNNNAATSHSSNSNA 208
                     7*********************************************8777766554444445578888888887555555555555555554444 PP

          DUF702 100 letss..................lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153
                     ++t+s                  lP+ v+++avf+c rvs++ +ge+e+aY ++v+i+GhvfkG+LydqG++
  XP_004511035.1 209 TTTRSlslditsschqdagfkqsLPRYVRAPAVFKCHRVSAIGNGEDEIAYLATVNISGHVFKGFLYDQGVD 280
                     5555466777889999******************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051421.3E-54114280IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016239.2E-26114155IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016243.2E-24232279IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MNMLGLRDLV LIAQTPSSLH HQQNQPISSD HHANLPLPSS SALSVGLGIF PLLTTMPNSH  60
NNHNNNIQDS NFWNLKMCQP PTRKGVEENE EKNKISMMGC DENGGINYGG EFRVCQDCGN  120
RAKKDCSFKR CRTCCKGRGF DCSTHVKSTW IPASLRRDRN MVVADGGGDS DGGVGGGSNG  180
SKRQRILVSS SHNNNNNAAT SHSSNSNATT TRSLSLDITS SCHQDAGFKQ SLPRYVRAPA  240
VFKCHRVSAI GNGEDEIAYL ATVNISGHVF KGFLYDQGVD GKNEMMPCVS ELQLGSNGSG  300
KSNRECSSAL EVTNSAYPAS AC
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004511035.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004511035.10.0protein LATERAL ROOT PRIMORDIUM 1-like
TrEMBLA0A1S2YWH80.0A0A1S2YWH8_CICAR; protein LATERAL ROOT PRIMORDIUM 1-like
STRINGXP_004511035.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57043154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.22e-44Lateral root primordium (LRP) protein-related