PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004510971.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

bHLH

Protein Properties

Length: 408aa MW: 45695.7 Da PI: 6.9358

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004510971.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.4	8e-11	345	389	6	54
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +++Er RR ri ++ +L +l P + +k s a++L +AveYIk+L XP_004510971.1 345 SIAERERRIRISARIKKLHDLFPIS----DKQTSTADMLDLAVEYIKDL 389 689*******************9....788*************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	13.681	339	389	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	8.77E-13	342	401	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.75E-11	343	394	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.1E-11	344	400	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.6E-9	345	395	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.9E-8	345	389	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 408 aa Download sequence Send to blast
MSVVYTHALN NYEDVARKNT EMESKIGNSQ QHCHPNNPGL SRYSSAPSSL LTSLVDTRIG 60 FLNEETFRNY NHNQHYAPTT SSEMETMMTN SEPLYELEEK QVKHEEKDPF SQRLQYNGYS 120 YESSNQIIYQ PQMSQGLQNG SLALENYAQT KVGFSNNCSN LIRQKSSPAE FFSNYSVDNG 180 FASLGEVGSV RGCDVSNGQS ITSTSGLNGA LNFSSRPISC SIMMPQIVEN EHESLQANCI 240 KSRNIGNDNG NTKCNMPSFT NDYWDNSTFN AQKSATNSGE IIFSSSNALE TQDVDFGYQK 300 LGLTHHLSLP SSSTKMTTME KFFHTQGSVP CKIRAKRGFA THPRSIAERE RRIRISARIK 360 KLHDLFPISD KQTSTADMLD LAVEYIKDLR KQLELLTDTK AKCTCSSN

Sequence ? help Back to Top

Protein Sequence Length: 408 aa Download sequence Send to blast

MSVVYTHALN NYEDVARKNT EMESKIGNSQ QHCHPNNPGL SRYSSAPSSL LTSLVDTRIG  60
FLNEETFRNY NHNQHYAPTT SSEMETMMTN SEPLYELEEK QVKHEEKDPF SQRLQYNGYS  120
YESSNQIIYQ PQMSQGLQNG SLALENYAQT KVGFSNNCSN LIRQKSSPAE FFSNYSVDNG  180
FASLGEVGSV RGCDVSNGQS ITSTSGLNGA LNFSSRPISC SIMMPQIVEN EHESLQANCI  240
KSRNIGNDNG NTKCNMPSFT NDYWDNSTFN AQKSATNSGE IIFSSSNALE TQDVDFGYQK  300
LGLTHHLSLP SSSTKMTTME KFFHTQGSVP CKIRAKRGFA THPRSIAERE RRIRISARIK  360
KLHDLFPISD KQTSTADMLD LAVEYIKDLR KQLELLTDTK AKCTCSSN

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004510971.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004510971.1	0.0	transcription factor bHLH130-like
TrEMBL	A0A1S2YWD8	0.0	A0A1S2YWD8_CICAR; transcription factor bHLH130-like
STRING	XP_004510971.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4005	33	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	3e-31	bHLH family protein