PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004510958.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family C2H2
Protein Properties Length: 347aa    MW: 39432.1 Da    PI: 6.9093
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004510958.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.18.1e-07186205120
                     EEETTTTEEESSHHHHHHHH CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                     ++Cp C+k+F+r  nL+ H+
  XP_004510958.1 186 FSCPVCSKTFNRYNNLQMHM 205
                     89*****************9 PP
2zf-C2H216.72e-05270292123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     y C +CgksF  k + ++H +++
  XP_004510958.1 270 YMCRKCGKSFAVKGDWRTHEKNC 292
                     89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.031186208IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.3E-6186205IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.762186213IPR007087Zinc finger, C2H2
PfamPF139128.1E-5186205IPR007087Zinc finger, C2H2
SuperFamilySSF576676.88E-9186208No hitNo description
PROSITE patternPS000280188208IPR007087Zinc finger, C2H2
SuperFamilySSF576676.88E-9265290No hitNo description
Gene3DG3DSA:3.30.160.601.4E-6266290IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035530270290IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.974270290IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MTDPQSNFFD EWYNFMLLNP HSSSSSSSSN QTNMLSSSSN YPFLHNSNNM YQIQFQHQAS  60
SSTLNPPSPP LREALPLINK LSLKNHQQEN HEPSNINSTT TLEEEEDDHD HDDINDDESV  120
TVALQIGLPR MSNSSCDLGS RMVSNCIEMA EKEELNMVSE HPLERLNKGQ YWIPTPSQIL  180
IGPTQFSCPV CSKTFNRYNN LQMHMWGHGS QYRKGPDSLK GTQPTAMLRL PCFCCAQGCK  240
HNIDHPRAKP LKDFRTLQTH YKRKHGIKPY MCRKCGKSFA VKGDWRTHEK NCGKIWYCLC  300
GSDFKHKRSL KDHIKAFGYG HGAFGIDCLQ EEDEVGSEIE HDGGSSV
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004510958.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1357701e-172BT135770.1 Medicago truncatula clone JCVI-FLMt-15M3 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004510958.10.0zinc finger protein WIP2-like
RefseqXP_004510959.10.0zinc finger protein WIP2-like
SwissprotQ9SVY11e-125ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A1S2YWC00.0A0A1S2YWC0_CICAR; zinc finger protein WIP2-like
STRINGXP_004510958.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-121C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]