PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004510954.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | C3H | ||||||||
Protein Properties | Length: 689aa MW: 74984.3 Da PI: 6.128 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 23.1 | 1.3e-07 | 273 | 293 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ GtC++Gd C +aHg XP_004510954.1 273 PCPEFRK-GTCRRGDMCEYAHG 293 8******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF48403 | 2.64E-19 | 6 | 144 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 3.05E-17 | 9 | 136 | No hit | No description |
Gene3D | G3DSA:1.25.40.20 | 4.5E-20 | 9 | 149 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 320 | 10 | 41 | IPR002110 | Ankyrin repeat |
Pfam | PF12796 | 4.8E-11 | 19 | 126 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 0.0072 | 58 | 88 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50297 | 18.086 | 58 | 166 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 4.7E-5 | 93 | 125 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 12.476 | 93 | 128 | IPR002110 | Ankyrin repeat |
PRINTS | PR01415 | 1.4E-5 | 94 | 109 | IPR002110 | Ankyrin repeat |
PRINTS | PR01415 | 1.4E-5 | 112 | 126 | IPR002110 | Ankyrin repeat |
SMART | SM00356 | 7.3E-6 | 268 | 294 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.31 | 273 | 295 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.3E-5 | 273 | 293 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 12 | 303 | 326 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 689 aa Download sequence Send to blast |
MKTLTIDTED SFSSLLEFAS NNDIEGFKLL LDKEGASSIN EAGIWYGRQN GSKQIVLEHR 60 TPLMVAATYG SIDVMKLILS YPEADVNFAC GVNKSTALHC AASGGSVNVV DVVRLLISAG 120 ADVNCVDVNG NRPVDVIVVP PKLQGMKAVL EELLLDNASD NGSVGDFSVP VSVKSSSSGS 180 LENGTALPYS PSVSPPSPMA ELKFTEKKEY PVDPSLPDIK NSIYASDEFR MFSFKVRPCS 240 RAYSHDWTEC PFVHPGENAR RRDPRKFHYS CVPCPEFRKG TCRRGDMCEY AHGVFECWLH 300 PAQYRTRLCK DGISCNRRVC FFAHIPEELR PLYASTGSAV PSPRSSATAL NAMDMAAAMN 360 LFPGSPSSVS SMSPSHFSQP MSPSGNSISF SNASWAQQNV PALHLPGSNL QSSRLRSSLS 420 ARDIPLEDFN VLTDFDGQQH LFNDLSCLSQ PGPGSCRSKT LTPSNLEELF SAEILSTPRY 480 SDQAMASVFS PSHKSAAMNQ FKQLQSMLSP INTNMLSPKN VDHPLLQASF GVPSSGRMSP 540 RSVEPISPMS PRMSAFVQRE KQQQQLRSIS SRDLGANNPT SVVGSPTNPW SKWGSPNGMA 600 DWSVNGDELS RQMRSASSFE HTNNGEEPDL SWVQTLVKDS SPEIIKEKFA SSGPIASADG 660 LNSNSQIESV DHSVLGAWLE QMKLDQLVV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004510954.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004510954.1 | 0.0 | zinc finger CCCH domain-containing protein 30-like | ||||
Swissprot | P93755 | 0.0 | C3H30_ARATH; Zinc finger CCCH domain-containing protein 30 | ||||
TrEMBL | A0A1S2YWC5 | 0.0 | A0A1S2YWC5_CICAR; zinc finger CCCH domain-containing protein 30-like | ||||
STRING | XP_004510954.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1732 | 33 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41900.1 | 0.0 | CCCH-type zinc finger protein with ARM repeat domain |
Publications ? help Back to Top | |||
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