PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004510891.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | TCP | ||||||||
Protein Properties | Length: 338aa MW: 36517.4 Da PI: 9.8434 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 122.3 | 5.7e-38 | 70 | 174 | 3 | 96 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.................ssssaseceaessss 80 k+ +++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti WLl+ a+pai+++tgt ++s+++++++e++++ XP_004510891.1 70 QKRASTKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLEHAEPAIIAATGTgtvpaiamsvngtlkipTTSPNKSSDPEQNQQ 164 5899***********************************************************55555544444444443222222222222222 PP TCP 81 sasnsssgkaaksaak 96 + + +++++k XP_004510891.1 165 QLE------DSPDKKK 174 222......1111111 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 9.6E-32 | 74 | 176 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.141 | 75 | 129 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008361 | Biological Process | regulation of cell size | ||||
GO:0048364 | Biological Process | root development | ||||
GO:1900056 | Biological Process | negative regulation of leaf senescence | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 338 aa Download sequence Send to blast |
MSQEGSRNID LTLGEPKEEP ETEDGSAINV MPMAMHVPTG ISMSMQVNKA LIQAQAQAQT 60 QVIQHQQPLQ KRASTKDRHT KVEGRGRRIR MPATCAARIF QLTRELGHKS DGETIRWLLE 120 HAEPAIIAAT GTGTVPAIAM SVNGTLKIPT TSPNKSSDPE QNQQQLEDSP DKKKRKRPVN 180 SAYVDINDST VSVSAGLITT SISNANINTN LTTTAIIPQQ TAIPLPQNMV PVWAIPSNAV 240 VPAGSAFFVV PTNQPQFFTL ARPISAFVSS MVTPVQIQQT STSSNTCSIS PPSKSPARAS 300 VMAPTAAATT TTQMLRDFSL EIYDRQELQL LSRSSSKH |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 170 | 177 | DKKKRKRP |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00638 | PBM | Transfer from Lj0g3v0004489 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004510891.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004510891.1 | 0.0 | transcription factor TCP9 | ||||
Swissprot | O64647 | 2e-80 | TCP9_ARATH; Transcription factor TCP9 | ||||
TrEMBL | A0A1S2YW73 | 0.0 | A0A1S2YW73_CICAR; transcription factor TCP9 | ||||
STRING | XP_004510891.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2118 | 30 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45680.1 | 1e-75 | TCP family protein |