PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004510807.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB
Protein Properties Length: 293aa    MW: 33281.2 Da    PI: 6.6181
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004510807.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.41e-151462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEde lv+ +k+ Gg+ +W++ ++  g+ R++k+c++rw +yl
   XP_004510807.1 14 KGPWTSEEDEVLVNFIKKNGGHgSWRSLPKLAGLLRCGKSCRLRWTNYL 62
                     79*******************9***********99************97 PP

2Myb_DNA-binding53.36.4e-1768113148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T+eE++l +++++ lG++ W++Ia+ ++ gRt++++k+ w+++l
   XP_004510807.1  68 RGPFTPEEEKLVIQLHAILGNR-WAAIASQLP-GRTDNEIKNLWNTHL 113
                      89********************.*********.************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.3E-21565IPR009057Homeodomain-like
PROSITE profilePS5129414.39962IPR017930Myb domain
SuperFamilySSF466891.14E-2811109IPR009057Homeodomain-like
SMARTSM007177.4E-111364IPR001005SANT/Myb domain
PfamPF002492.9E-131462IPR001005SANT/Myb domain
CDDcd001671.25E-71662No hitNo description
PROSITE profilePS5129426.163117IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.1E-2766118IPR009057Homeodomain-like
SMARTSM007177.3E-1667115IPR001005SANT/Myb domain
PfamPF002495.5E-1668113IPR001005SANT/Myb domain
CDDcd001671.80E-1170113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009909Biological Processregulation of flower development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MGRTPCCDKL GLKKGPWTSE EDEVLVNFIK KNGGHGSWRS LPKLAGLLRC GKSCRLRWTN  60
YLRPDIKRGP FTPEEEKLVI QLHAILGNRW AAIASQLPGR TDNEIKNLWN THLKKRLISM  120
GIDPQTHEPI SSSHYYPIDK SHSSIATRHM AQWESARLEA EARLSKDSSL FNNKTTDSDY  180
FLKMWNSEVG QSFRTVRKSD FDDDEEKTRC QSCMSQEGSS CNNDNKCGSV SATTTTDLAS  240
SRNVKEEFEW KNYKLFDICG YDSSSSNDLE DSSDTALQLL LDFPSNNDMS FLE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-28121175108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00114ampDAPTransfer from AT3G61250Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004510807.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004510807.10.0transcription factor MYB41-like
SwissprotQ9M2D91e-121MYB17_ARATH; Transcription factor MYB17
TrEMBLA0A1S2YW050.0A0A1S2YW05_CICAR; transcription factor MYB41-like
STRINGXP_004510807.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23313280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.11e-117myb domain protein 17